CB304455

Overview
NameCB304455
Unique NameCB304455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_METBF (Tryptophan synthase alpha chain OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.895e-11
Identity = 42/89 (47.19%), Postives = 52/89 (58.43%), Query Frame = -1
Query:  269 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 535
            VS +GVTGAR  +S   + LL  ++  T  P AVGFGIS  E   +V   GAD VIVGSA VK++ E +   E    LE  AK LKS +
Sbjct:  176 VSRLGVTGAREDVSSSTRELLSRVE--TGLPKAVGFGISTGEQAAEVRDAGADAVIVGSAFVKIIDEGKDVNE---RLEALAKELKSGI 259          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_IDILO (Tryptophan synthase alpha chain OS=Idiomarina loihiensis GN=trpA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.895e-11
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = -1
Query:  272 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 535
            +S  GVTGA   +      L+ ++KE+   P  +GFGIS+PEHVQ+    GADG I GSA+V L+ +   +  + + +L+ F KS+K+A
Sbjct:  177 LSRSGVTGADTQMQAPASELINKLKEAGAPPTLLGFGISQPEHVQRALAAGADGAISGSAVVALIEKNLDNNAQQVADLKAFVKSMKAA 265          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_METAC (Tryptophan synthase alpha chain OS=Methanosarcina acetivorans GN=trpA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.781e-11
Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = -1
Query:  269 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 535
            VS +GVTGARA +SG  + LL  +K  T  P AVGFGIS  +   +V   GAD VIVGS  V+++ E     E   +LE  A+ LKS +
Sbjct:  185 VSRLGVTGARADVSGSTKELLSRVK--TDIPKAVGFGISTGKQAAEVRKAGADAVIVGSVFVRIIEEGNGVNE---KLEALARELKSGI 268          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_METMA (Tryptophan synthase alpha chain OS=Methanosarcina mazei GN=trpA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.938e-11
Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = -1
Query:  269 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 535
            VS +GVTGAR  ++G  + LL  +  +T  P AVGFGIS  E   +V   GADGVIVGSA V+++ E     E    LE  A+ LKS +
Sbjct:  184 VSRLGVTGARDDVAGSTKELLSRV--NTDIPKAVGFGISTGEQAAEVRKAGADGVIVGSAFVRIIEEGTDVNE---RLETLARELKSGM 267          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_CHLSY (Tryptophan synthase alpha chain OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=trpA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.938e-11
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = -1
Query:  269 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 535
            VS  GVTGAR +++G++  L+  +++ T  P+ VGFGIS+P H+ +VA   ADG IVGSA++  L E   PE+ +     + + L SA+
Sbjct:  177 VSLTGVTGARQTLAGNLTDLIANVRQQTNLPLVVGFGISQPAHIAEVARI-ADGAIVGSALIDRL-ERLPPEDRVSGAAAYIRELLSAV 263          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_CHLAA (Tryptophan synthase alpha chain OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trpA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.938e-11
Identity = 37/89 (41.57%), Postives = 57/89 (64.04%), Query Frame = -1
Query:  269 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 535
            VS  GVTGAR +++G++  L+  +++ T  P+ VGFGIS+P H+ +VA   ADG IVGSA++  L E   PE+ +     + + L SA+
Sbjct:  177 VSLTGVTGARQTLAGNLTDLIANVRQQTNLPLVVGFGISQPAHIAEVARI-ADGAIVGSALIDRL-ERLPPEDRVSGAAAYIRELLSAV 263          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_METM5 (Tryptophan synthase alpha chain OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=trpA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.449e-11
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = -1
Query:  269 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 535
            +S+ G+TGAR +        ++  + +    + VGFGISK  H + +   GADGVIVGSA V ++      EE L +LE+FAK L   +
Sbjct:  162 ISTFGITGARDTFEQMTFDFIKRARTTCKGKICVGFGISKGSHAESLIEQGADGVIVGSAFVDIIKNYGDSEEALVKLEEFAKELSEGI 250          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_THEP3 (Tryptophan synthase alpha chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=trpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.423e-11
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = -1
Query:  269 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 535
            VS  GVTGAR  I   ++  ++ + + T  P A+GFGIS PE  +++  + +DG+IVGSA+V+ + +  +  E L+E++ F   LK  L
Sbjct:  175 VSITGVTGAREDIETDIEEYMKTVSQYTNMPKAIGFGISTPEMAKKLKDF-SDGIIVGSALVERIAKGYNKSEMLQEVKSFVSILKEVL 262          
The following BLAST results are available for this feature:
BLAST of CB304455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
TRPA_METBF2.895e-1147.19Tryptophan synthase alpha chain OS=Methanosarcina ... [more]
TRPA_IDILO2.895e-1140.45Tryptophan synthase alpha chain OS=Idiomarina loih... [more]
TRPA_METAC3.781e-1146.07Tryptophan synthase alpha chain OS=Methanosarcina ... [more]
TRPA_METMA4.938e-1146.07Tryptophan synthase alpha chain OS=Methanosarcina ... [more]
TRPA_CHLSY4.938e-1141.57Tryptophan synthase alpha chain OS=Chloroflexus au... [more]
TRPA_CHLAA4.938e-1141.57Tryptophan synthase alpha chain OS=Chloroflexus au... [more]
TRPA_METM56.449e-1138.20Tryptophan synthase alpha chain OS=Methanococcus m... [more]
TRPA_THEP38.423e-1138.20Tryptophan synthase alpha chain OS=Thermoanaerobac... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_B01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_B01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304455 ID=CB304455; Name=CB304455; organism=Citrus sinensis; type=EST; length=535bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACCAAGTTTTGCCATTAT
TTGAATATAGAATCCATCTTGCAAGGACTTGCAGAGTAAGCATTACACAA
TCTCCAAATCAGGATTTGGAGAATAGATTCTCTAATTTTATACTACATAT
TCAACTTTAGCATCAGGAAATACAGTTCTTTTTAAAATTTGATTCTCTAA
ATAGAAAATTGTTTTTAGAAGTACACTTGATCAAACATTATTGCTGATCT
ACATTACTGTTCTCACGGGAGAGCAGATTTTAACGATTTTGCGAATTTTT
CTAGCTCCTTCAGTCCCTCCTCAGGAGATTGTGCTTCACCCAATAGCTTC
ACCATAGCACTCCCAACAATCACACCATCAGCTCCCCATCCTGCTACTTG
TTGCACATGCTCAGGTTTTGATATGCCAAAGCCAACTGCAACGGGCTTAG
TTGTTGACTCTTTAATTTCCCTTAAAAGAGTTTGAACATGGCCACTAATA
GAAGCGCGAGCTCCAGTAACTCCAATTGAGCTTAC
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