CB304457

Overview
NameCB304457
Unique NameCB304457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2850 contig Csv1_Contig2850:348..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 9.744e-34
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = -1
Query:  307 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALKDIGPK 549
            HNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL+Q++DGF  GKDLV+SV  AMGEEQI  +KDIGPK
Sbjct:   79 HNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.273e-33
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = -1
Query:  307 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALKDIGPK 549
            HNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+NLL+ I+DGF  GKDLV+SV  AMGEEQI  +KD+GPK
Sbjct:   79 HNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.273e-33
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = -1
Query:  307 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALKDIGPK 549
            HNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+NLL+ I+DGF  GKDLV+SV  AMGEEQI  +KD+GPK
Sbjct:   79 HNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A1_MEDSA (Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.273e-33
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = -1
Query:  307 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALKDIGPK 549
            HNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD++LL+QI+DGF  GKDLVVSV  AMGEEQI ALKDIG K
Sbjct:   80 HNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGGK 160          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A1_ARATH (Eukaryotic translation initiation factor 5A-1 OS=Arabidopsis thaliana GN=At1g13950 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.835e-33
Identity = 66/81 (81.48%), Postives = 73/81 (90.12%), Query Frame = -1
Query:  307 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALKDIGPK 549
            HNCDVPHV RTDYQLIDISEDG+VSLLT+NG+TKDDL+LP D+ LL QI+ GF+ GKDLVVSV  AMGEEQINALKDIGPK
Sbjct:   78 HNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.836e-33
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = -1
Query:  307 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALKDIGPK 549
            HNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL+Q++ GFE GKDLV+SV  AMGEEQI A+KDIG K
Sbjct:   79 HNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTK 159          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.249e-33
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = -1
Query:  307 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALKDIGPK 549
            HNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL+Q++ GFE GKDLV+SV  AMGEEQI A+KDIG K
Sbjct:   79 HNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDALLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTK 159          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A3_ARATH (Eukaryotic translation initiation factor 5A-3 OS=Arabidopsis thaliana GN=At1g69410 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.983e-32
Identity = 63/81 (77.78%), Postives = 74/81 (91.36%), Query Frame = -1
Query:  307 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALKDIGPK 549
            HNCDVPHV R DYQLIDISEDGFVSLLT+NG+TKDDL+LPTDE LL+Q+++GFE GKD+VVSV  AMGEEQ+ ALK++GPK
Sbjct:   78 HNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A_DIACA (Eukaryotic translation initiation factor 5A OS=Dianthus caryophyllus PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.236e-29
Identity = 56/78 (71.79%), Postives = 71/78 (91.03%), Query Frame = -1
Query:  316 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALKDI 549
            HNCDVPHV R DYQL+DI+EDGFVSLLT++G+TKDDL+LP DE L+ Q+++GFE+GKDL++SV CAMGEEQI A+KD+
Sbjct:   79 HNCDVPHVNRVDYQLLDITEDGFVSLLTDSGDTKDDLKLPADEALVKQMKEGFEAGKDLILSVMCAMGEEQICAVKDV 156          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A2_ARATH (Eukaryotic translation initiation factor 5A-2 OS=Arabidopsis thaliana GN=At1g26630 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.043e-27
Identity = 56/79 (70.89%), Postives = 69/79 (87.34%), Query Frame = -1
Query:  313 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALKDIG 549
            HNCDVPHV R DYQLIDI+EDGFVSLLT++G TKDDL+LPTD+ L +Q+R GF+ GKD+VVSV  +MGEEQI A+K++G
Sbjct:   78 HNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156          
The following BLAST results are available for this feature:
BLAST of CB304457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
IF5A1_SOLLC9.744e-3482.72Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A1_TOBAC1.273e-3382.72Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL1.273e-3382.72Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_MEDSA1.273e-3385.19Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A1_ARATH2.835e-3381.48Eukaryotic translation initiation factor 5A-1 OS=A... [more]
IF5A4_SOLLC4.836e-3382.72Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_SOLTU8.249e-3382.72Eukaryotic translation initiation factor 5A-1/2 OS... [more]
IF5A3_ARATH6.983e-3277.78Eukaryotic translation initiation factor 5A-3 OS=A... [more]
IF5A_DIACA4.236e-2971.79Eukaryotic translation initiation factor 5A OS=Dia... [more]
IF5A2_ARATH1.043e-2770.89Eukaryotic translation initiation factor 5A-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_B03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_B03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304457 ID=CB304457; Name=CB304457; organism=Citrus sinensis; type=EST; length=549bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCATGTTTGAAACAACCAA
AAGGTGCTTCGAAGTGTATATACAGTCACGTTGGCGGATACAACTTCTGC
ACACCGAGAACAACCATGTTTCAACTTTCAAGCAATCAAACAGAATAAAA
ATATTGTCGATAGAAAACAATTAATAATATGGTAAGAGTCATTTTATATG
AAATGATGACATTCATCTTGAAACCGGACACCAGTAAGCTACACTACTAT
CCACCTTCCCACAGCTTTCAGCAATCTGCATTCTCGATCAAGCAAAAAGT
CTTTTACTTGGGGCCAATGTCCTTCAGGGCATTGATCTGCTCCTCTCCCA
TAGCACACTGAACTGAGACAACCAGATCTTTCCCACTCTCAAATCCATCC
CTGATCTGTGAAAGAAGATTTTCATCAGTTGGAAGTCTCAGGTCATCCTT
GGTATTGCCATTCTCAGTCAGCAGGCTAACAAATCCATCCTCAGAGATAT
CAATCAGCTGGTAGTCAGTGCGAGTGACATGAGGAACATCACAGTTGTG
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