CB304457

Overview
NameCB304457
Unique NameCB304457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2850 contig Csv1_Contig2850:348..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A_SPOFR (Eukaryotic translation initiation factor 5A OS=Spodoptera frugiperda GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.041e-15
Identity = 38/76 (50.00%), Postives = 59/76 (77.63%), Query Frame = -1
Query:  322 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALK 549
            HN DVPHV R DYQL DIS+DG+++L+ +NG+ ++DL++P D +L +Q+R  F+SGK+L+ +V  + GEE + A+K
Sbjct:   79 HNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A_SPOEX (Eukaryotic translation initiation factor 5A OS=Spodoptera exigua GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.041e-15
Identity = 38/76 (50.00%), Postives = 59/76 (77.63%), Query Frame = -1
Query:  322 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALK 549
            HN DVPHV R DYQL DIS+DG+++L+ +NG+ ++DL++P D +L +Q+R  F+SGK+L+ +V  + GEE + A+K
Sbjct:   79 HNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A2_SCHPO (Eukaryotic translation initiation factor 5A-2 OS=Schizosaccharomyces pombe GN=tif51b PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.547e-15
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = -1
Query:  319 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALKD 549
            HN DVP V R +YQL++I +DG+++L+T +G TKDD+RLP  E L ++I +GFE GKDL+++V  AMGEE   A +D
Sbjct:   79 HNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGFEEGKDLIITVVSAMGEEIALACRD 153          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A1_SCHPO (Eukaryotic translation initiation factor 5A-1 OS=Schizosaccharomyces pombe GN=tif51a PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.323e-14
Identity = 39/77 (50.65%), Postives = 58/77 (75.32%), Query Frame = -1
Query:  319 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALKD 549
            HN DVP V R +YQL++I +DG+++L+T +G TKDD+RLP  E L ++I +GF+ G+DL+++V  AMGEE   A +D
Sbjct:   79 HNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGFDEGRDLIITVVSAMGEETALACRD 153          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A_DROME (Eukaryotic translation initiation factor 5A OS=Drosophila melanogaster GN=eIF-5A PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = -1
Query:  322 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALK 549
            HN DVP+V R D QLI IS+D F++L+TE+G+ ++DL++P  E L  Q+R  F+SGKDL+ +V  A GEE + A+K
Sbjct:   78 HNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGE-LGEQLRLDFDSGKDLLCTVLKACGEECVIAIK 152          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A2_PONAB (Eukaryotic translation initiation factor 5A-2 OS=Pongo abelii GN=EIF5A2 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 3.259e-13
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = -1
Query:  322 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALK 549
            HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +I   + +G+D+ VSV CAM EE   A+K
Sbjct:   77 HNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A2_MOUSE (Eukaryotic translation initiation factor 5A-2 OS=Mus musculus GN=Eif5a2 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 3.259e-13
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = -1
Query:  322 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALK 549
            HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +I   + +G+D+ VSV CAM EE   A+K
Sbjct:   77 HNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A2_HUMAN (Eukaryotic translation initiation factor 5A-2 OS=Homo sapiens GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 3.259e-13
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = -1
Query:  322 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALK 549
            HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +I   + +G+D+ VSV CAM EE   A+K
Sbjct:   77 HNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A_CANAL (Eukaryotic translation initiation factor 5A OS=Candida albicans GN=ANB1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.260e-13
Identity = 35/77 (45.45%), Postives = 59/77 (76.62%), Query Frame = -1
Query:  319 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALKD 549
            HN +VP+V+R ++QL+DI +DG++SL+T +G+TKDD+++P  E L  +++  F+ GKDL+V++  AMGEE   + K+
Sbjct:   77 HNMEVPNVSRQEFQLLDI-DDGYLSLMTADGDTKDDVKVPEGE-LGDKLQSEFDEGKDLIVTIISAMGEEAAISYKE 151          
BLAST of CB304457 vs. ExPASy Swiss-Prot
Match: IF5A1_YEAST (Eukaryotic translation initiation factor 5A-1 OS=Saccharomyces cerevisiae GN=HYP1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 2.759e-12
Identity = 36/77 (46.75%), Postives = 55/77 (71.43%), Query Frame = -1
Query:  319 HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIRDGFESGKDLVVSVQCAMGEEQINALKD 549
            HN +VP V R++YQL+DI +DG++SL+T +G TKDD++ P  E L   ++  F+ GKDL+V++  AMGEE   + K+
Sbjct:   78 HNLEVPFVKRSEYQLLDI-DDGYLSLMTMDGETKDDVKAPEGE-LGDSMQAAFDEGKDLMVTIISAMGEEAAISFKE 152          
The following BLAST results are available for this feature:
BLAST of CB304457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
IF5A_SPOFR2.041e-1550.00Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A_SPOEX2.041e-1550.00Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A2_SCHPO4.547e-1553.25Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A1_SCHPO1.323e-1450.65Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A_DROME2.495e-1351.32Eukaryotic translation initiation factor 5A OS=Dro... [more]
IF5A2_PONAB3.259e-1351.32Eukaryotic translation initiation factor 5A-2 OS=P... [more]
IF5A2_MOUSE3.259e-1351.32Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A2_HUMAN3.259e-1351.32Eukaryotic translation initiation factor 5A-2 OS=H... [more]
IF5A_CANAL7.260e-1345.45Eukaryotic translation initiation factor 5A OS=Can... [more]
IF5A1_YEAST2.759e-1246.75Eukaryotic translation initiation factor 5A-1 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_B03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_B03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304457 ID=CB304457; Name=CB304457; organism=Citrus sinensis; type=EST; length=549bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCATGTTTGAAACAACCAA
AAGGTGCTTCGAAGTGTATATACAGTCACGTTGGCGGATACAACTTCTGC
ACACCGAGAACAACCATGTTTCAACTTTCAAGCAATCAAACAGAATAAAA
ATATTGTCGATAGAAAACAATTAATAATATGGTAAGAGTCATTTTATATG
AAATGATGACATTCATCTTGAAACCGGACACCAGTAAGCTACACTACTAT
CCACCTTCCCACAGCTTTCAGCAATCTGCATTCTCGATCAAGCAAAAAGT
CTTTTACTTGGGGCCAATGTCCTTCAGGGCATTGATCTGCTCCTCTCCCA
TAGCACACTGAACTGAGACAACCAGATCTTTCCCACTCTCAAATCCATCC
CTGATCTGTGAAAGAAGATTTTCATCAGTTGGAAGTCTCAGGTCATCCTT
GGTATTGCCATTCTCAGTCAGCAGGCTAACAAATCCATCCTCAGAGATAT
CAATCAGCTGGTAGTCAGTGCGAGTGACATGAGGAACATCACAGTTGTG
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