CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.868e-45
Identity = 91/105 (86.67%), Postives = 98/105 (93.33%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPTVDVSVVDLTVRLEK+A+YDEIKAAIK ESEGKLKGI G+TEDDVVSTDF+GD+RSS+FDAKAGIALSK FVKLVSWYDNE GYSTRVVDLI HIA  +
Sbjct:  233 MAFRVPTVDVSVVDLTVRLEKEATYDEIKAAIKEESEGKLKGIPGHTEDDVVSTDFIGDNRSSIFDAKAGIALSKNFVKLVSWYDNEMGYSTRVVDLIKHIASVE 337          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.345e-45
Identity = 87/104 (83.65%), Postives = 99/104 (95.19%), Query Frame = -2
Query:  366 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKT 677
            M+FRVPTVDVSVVDLTVRLEK+A+Y++IKAAIK ESEGK+KGILGYTEDDVVSTDFVGD+RSS+FDAKAGI L+  FVKLVSWYDNEWGYS+RVVDLI H++KT
Sbjct:  233 MSFRVPTVDVSVVDLTVRLEKEATYEQIKAAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVDLIRHMSKT 336          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.090e-44
Identity = 89/105 (84.76%), Postives = 98/105 (93.33%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPTVDVSVV LTVRLEK A+Y +IKAAIK ESEGKLKGILGYTEDDVVSTDF+GD+RSS+FDAKAGIAL+   VKLVSWYDNEWGYS+RVVDLIVH++KTQ
Sbjct:  234 MAFRVPTVDVSVVGLTVRLEKKATYADIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYSSRVVDLIVHMSKTQ 338          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.090e-44
Identity = 90/107 (84.11%), Postives = 100/107 (93.46%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD--LIVHIAKTQ 677
            MAFRVPTVDVSVVDLTVRLEK ASY+EIKA IKAESEGKLKGILGYTE+DVVSTDF+GD+RSS+FDAKAGIAL++ FVKLVSWYDNEWGYS+RV+D  LIVH+A  Q
Sbjct:  235 MAFRVPTVDVSVVDLTVRLEKAASYEEIKAVIKAESEGKLKGILGYTEEDVVSTDFIGDNRSSIFDAKAGIALNEHFVKLVSWYDNEWGYSSRVIDLILIVHMASCQ 341          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.171e-44
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = -2
Query:  366 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKT 677
            M FRVPT DVSVVDLTV+LEK A+Y EIKAAIK ESEGKLKGILGYTEDDVVSTDF+GDSRSS+FDAKAGIAL+  FVKLVSWYDNEWGYS+RV+DLIVH+  T
Sbjct:  236 MCFRVPTQDVSVVDLTVKLEKSATYGEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVIDLIVHMDST 339          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.141e-44
Identity = 88/105 (83.81%), Postives = 96/105 (91.43%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            M+FRVPTVDVSVVDLTVR EK ASYD+IK AIKA SEGKLKGI+GY E+D+VSTDFVGDSRSS+FDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI H+AKTQ
Sbjct:  233 MSFRVPTVDVSVVDLTVRTEKAASYDDIKKAIKAASEGKLKGIMGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMAKTQ 337          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.205e-43
Identity = 85/105 (80.95%), Postives = 97/105 (92.38%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            M+FRVPTVDVSVVDLTVR+EK ASYD IK+AIK+ SEGKLKGI+GY E+D+VSTDFVGDSRSS+FDAKAGIAL+  FVKLV+WYDNEWGYS RV+DLI H+AKTQ
Sbjct:  233 MSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.205e-43
Identity = 85/105 (80.95%), Postives = 97/105 (92.38%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            M+FRVPTVDVSVVDLTVR+EK ASYD IK+AIK+ SEGKLKGI+GY E+D+VSTDFVGDSRSS+FDAKAGIAL+  FVKLV+WYDNEWGYS RV+DLI H+AKTQ
Sbjct:  233 MSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.574e-43
Identity = 86/105 (81.90%), Postives = 96/105 (91.43%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            M+FRVPTVDVSVVDLTVRLEK A+YDEIKAA+KAE+EG LKGILGY E+D+VSTDF GDSRSS+FDAKAGIAL+  FVKLVSWYDNEWGYSTRVVDLI H+  T+
Sbjct:  233 MSFRVPTVDVSVVDLTVRLEKSATYDEIKAAVKAEAEGSLKGILGYVEEDLVSTDFQGDSRSSIFDAKAGIALNGNFVKLVSWYDNEWGYSTRVVDLIRHMNSTK 337          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.055e-43
Identity = 87/103 (84.47%), Postives = 93/103 (90.29%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT DVSVVDLTVRLEK ASYD IK AIK  SEG++KGILGYTEDDVVSTDF+ DSRSS+FDAKAGIALS  FVKLV+WYDNEWGYS RVVDLIVH+AK
Sbjct:  235 MAFRVPTTDVSVVDLTVRLEKPASYDAIKTAIKEASEGQMKGILGYTEDDVVSTDFITDSRSSIFDAKAGIALSDTFVKLVAWYDNEWGYSNRVVDLIVHMAK 337          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3PC_PETHY2.868e-4586.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU8.345e-4583.65Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_RANAC1.090e-4484.76Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI1.090e-4484.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA3.171e-4483.65Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU4.141e-4483.81Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ1.205e-4380.95Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI1.205e-4380.95Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE1.574e-4381.90Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA2.055e-4384.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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