CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.189e-40
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MA RVPT +VSVVDLTVR+EK ASYDEIK A+K  SEG L GILGYTEDD+V+TD  GD+RSS+FDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V+IAK
Sbjct:  230 MAMRVPTANVSVVDLTVRIEKGASYDEIKQAVKEASEGPLSGILGYTEDDIVTTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.379e-39
Identity = 77/103 (74.76%), Postives = 92/103 (89.32%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            +AFRVPTVDVSVVDLTV L+K+ +Y+EIK+ IKA SEGKLKG+LGYTED VVS+DF+GD RSS+FDA AGI L+  FVKL+SWYDNE+GYSTRVVDL+ H+AK
Sbjct:  230 LAFRVPTVDVSVVDLTVNLKKETTYEEIKSVIKAASEGKLKGVLGYTEDAVVSSDFLGDERSSIFDASAGIQLTPSFVKLISWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.801e-39
Identity = 79/104 (75.96%), Postives = 91/104 (87.50%), Query Frame = -2
Query:  366 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKT 677
            MAFRVPTVDVSVVDLTV L K+ SYDEIKAA+K  SEG +KGILGYTEDDVVS+DF+GD+ SS+ DA AGI L+  FVKLVSWYDNE+GYSTRVVDL+ H+AK+
Sbjct:  229 MAFRVPTVDVSVVDLTVNLAKETSYDEIKAALKKASEGSMKGILGYTEDDVVSSDFLGDAHSSIVDAAAGIQLTPTFVKLVSWYDNEFGYSTRVVDLVEHVAKS 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.071e-39
Identity = 78/103 (75.73%), Postives = 91/103 (88.35%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT DVSVVDLTVRL K+ SYD+IKAA+K  SEG L+G LGYTEDDVVS+DF+GD+RSS+FDAKAGI LSK FVK+VSWYDNE+GYS RV+DL+ H+ K
Sbjct:  227 MAFRVPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQK 329          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.011e-39
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT +VSVVDLTVRL K+ SYD+IKAA+KA SEG L+G+LGYTEDDVVS DF GD+RSS+FDAKAGI LSK FVK+VSWYDNE+GYS RV+DLI H+ K
Sbjct:  227 MAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQK 329          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 4.011e-39
Identity = 76/103 (73.79%), Postives = 93/103 (90.29%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPTVDVSVVDLTV+LEK+A+YD+IK A+KA +EG +KG+LGYTED VVS+DF+GD+ +S+FDA AGI LS KFVKL+SWYDNE+GYS RVVDLI ++AK
Sbjct:  229 MAFRVPTVDVSVVDLTVKLEKEATYDQIKKAVKAAAEGPMKGVLGYTEDAVVSSDFLGDTHASIFDASAGIQLSPKFVKLISWYDNEYGYSARVVDLIEYVAK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.239e-39
Identity = 77/103 (74.76%), Postives = 92/103 (89.32%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+ RVPT +VSVVDLTVRLEK A+YDEIK A+KA ++G L GILGYTED++VSTD  GD+RSS+FDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+V+IAK
Sbjct:  230 MSMRVPTSNVSVVDLTVRLEKGATYDEIKEAVKAAADGPLNGILGYTEDEIVSTDLNGDTRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.936e-39
Identity = 82/103 (79.61%), Postives = 90/103 (87.38%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGK-LKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            MAFRVPT DVSVVDLTVRLEK ASYDEIKA IK  SE + LKGILGYTED VVSTDFVGD+ SS+FDAKAGI LS  FVKL+SWYDNE+GYSTRVVDL+ ++A
Sbjct:  231 MAFRVPTPDVSVVDLTVRLEKPASYDEIKATIKKASESEELKGILGYTEDQVVSTDFVGDAHSSIFDAKAGIQLSPTFVKLISWYDNEFGYSTRVVDLLAYVA 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.167e-38
Identity = 79/103 (76.70%), Postives = 90/103 (87.38%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT DVSVVDLTVRLEK A+Y+EIKA IK  SE +LKGILGYT D VVSTDFVGD++SS+FDA AGIAL+ KFVKLVSWYDNE+GYS RV+DL+ + AK
Sbjct:  230 MAFRVPTPDVSVVDLTVRLEKGATYEEIKAVIKKASENELKGILGYTNDQVVSTDFVGDAQSSIFDAAAGIALNDKFVKLVSWYDNEFGYSNRVIDLLAYAAK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.524e-38
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPTVDVSVVDLTV+L K+A+YDEIKA IK  SE +LKGILGYTED VVS+DF+GD+ SS+FDA AGI LS KFVKLV+WYDNE+GYSTRVVDL+  +AK
Sbjct:  228 MAFRVPTVDVSVVDLTVKLAKEATYDEIKAVIKKASENELKGILGYTEDAVVSSDFLGDTNSSIFDAAAGIQLSPKFVKLVTWYDNEYGYSTRVVDLVELVAK 330          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_CURLU6.189e-4076.70Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_PICPA1.379e-3974.76Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_ZYGRO1.801e-3975.96Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P_HOMAM3.071e-3975.73Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_PANVR4.011e-3976.70Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3P1_YEAST4.011e-3973.79Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P_PHANO5.239e-3974.76Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P3_RHIRA8.936e-3979.61Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]
G3P2_RHIRA1.167e-3876.70Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P2_KLULA1.524e-3876.70Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
back to top