CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.991e-38
Identity = 77/105 (73.33%), Postives = 90/105 (85.71%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            M+FRVPT DVSVVDLT RL   ASYDEIKAAIK+ SE ++KGILGYTE  VVS+DF+GDS SS+FDA+AGIAL+  FVKLVSWYDNEWGYS+RV+DLI H+ K +
Sbjct:  228 MSFRVPTADVSVVDLTARLVNPASYDEIKAAIKSASENEMKGILGYTEKAVVSSDFIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKNE 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.600e-38
Identity = 76/103 (73.79%), Postives = 88/103 (85.44%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            +AFRVPT+DVSVVDL  R EK A+YDEIKAA+K  S+G LKGILGYTED VVSTDF+GD+ SS+FDA AGI L+K FVKL++WYDNEWGYS RVVDL+V  AK
Sbjct:  230 LAFRVPTLDVSVVDLVCRTEKSATYDEIKAAVKEASKGPLKGILGYTEDHVVSTDFIGDNHSSIFDATAGIQLNKNFVKLIAWYDNEWGYSGRVVDLLVFAAK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.396e-38
Identity = 77/103 (74.76%), Postives = 89/103 (86.41%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+FR+PT DVSVVDL VRLEK ASYD+IK  IK  SEG+LKGILGYTED+VVSTDF+G + SSVFDAKAGI L+ KFVKL+SWYDNE+GYS RV DLI ++AK
Sbjct:  230 MSFRIPTSDVSVVDLVVRLEKGASYDQIKEVIKKASEGELKGILGYTEDEVVSTDFLGSTESSVFDAKAGIPLNDKFVKLISWYDNEYGYSRRVCDLIAYVAK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.396e-38
Identity = 74/102 (72.55%), Postives = 91/102 (89.22%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            MAFRVPTVDVSVVDLTV+L K+A+YDEIKAA+K  S+GKLK ++GYTED VVS+DF+GD+ S++FDA AGI LS KFVK+V+WYDNE+GYS RVVDL+ H+A
Sbjct:  228 MAFRVPTVDVSVVDLTVKLAKEATYDEIKAAVKKASQGKLKNVVGYTEDSVVSSDFLGDTHSTIFDASAGIQLSPKFVKVVAWYDNEYGYSERVVDLVEHVA 329          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.792e-38
Identity = 74/103 (71.84%), Postives = 87/103 (84.47%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+ RVPT +VSVVDLT R+EK ASYDEIK AIK  +EG LKG+L YTEDDVVSTD +G+  SS+FDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H+AK
Sbjct:  231 MSMRVPTTNVSVVDLTARIEKGASYDEIKQAIKEAAEGPLKGVLAYTEDDVVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAK 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.792e-38
Identity = 76/102 (74.51%), Postives = 90/102 (88.24%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            MAFRVPT DVSVVDLTV+L K A+YDEIKAA+K  SEGKLK ++GYTED VVS+DF+GD+ S++FDA AGI LS KFVKLV+WYDNE+GYSTRVVDL+ H+A
Sbjct:  228 MAFRVPTTDVSVVDLTVKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.792e-38
Identity = 77/103 (74.76%), Postives = 92/103 (89.32%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +SVFDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI HI+K
Sbjct:  229 MAFRVPTPNVSVVDLTVRLEKPATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.565e-38
Identity = 78/105 (74.29%), Postives = 89/105 (84.76%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPT +VSVVDLT RL+K A YD+IK  +KA SEG LKGILGYTED VVS+DF GDSRSS+FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VH+A  +
Sbjct:  229 MAFRVPTPNVSVVDLTCRLQKPAKYDDIKKVMKAASEGPLKGILGYTEDQVVSSDFNGDSRSSIFDAAAGIALNDNFVKLVSWYDNEFGYSNRVVDLLVHMASKE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.565e-38
Identity = 76/103 (73.79%), Postives = 88/103 (85.44%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MA RVPT +VSVVDLTVR EK  +YD+IK A+K  SE +LKGILGYTEDD+VSTD  GD+RSS+FDAKAGIAL+  F+KLVSWYDNEWGYS RVVDLI +I+K
Sbjct:  230 MAMRVPTSNVSVVDLTVRTEKAVTYDQIKDAVKKASENELKGILGYTEDDIVSTDLNGDTRSSIFDAKAGIALNSNFIKLVSWYDNEWGYSRRVVDLITYISK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.565e-38
Identity = 76/102 (74.51%), Postives = 87/102 (85.29%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            MAFRVPT DVSVVDLTV+L K  +Y++IKAAIKA SEG +KG+LGYTED VVSTDF GD+ SS+FDA AGI LS +FVKLVSWYDNEWGYS RVVDL+ + A
Sbjct:  231 MAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTA 332          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_PHYIN1.991e-3873.33Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P_LENED2.600e-3873.79Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
G3P_CRYCU3.396e-3874.76Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P1_KLULA3.396e-3872.55Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_COLGL5.792e-3871.84Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P1_KLUMA5.792e-3874.51Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P1_ESCF35.792e-3874.76Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_TRISI7.565e-3874.29Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_EMENI7.565e-3873.79Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P2_SCHPO7.565e-3874.51Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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