CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.565e-38
Identity = 77/103 (74.76%), Postives = 92/103 (89.32%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +SVFDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI HI+K
Sbjct:  229 MAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.565e-38
Identity = 77/103 (74.76%), Postives = 92/103 (89.32%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +SVFDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI HI+K
Sbjct:  229 MAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.565e-38
Identity = 77/103 (74.76%), Postives = 92/103 (89.32%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +SVFDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI HI+K
Sbjct:  229 MAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.565e-38
Identity = 77/103 (74.76%), Postives = 92/103 (89.32%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +SVFDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI HI+K
Sbjct:  229 MAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.565e-38
Identity = 77/103 (74.76%), Postives = 92/103 (89.32%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +SVFDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI HI+K
Sbjct:  229 MAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.565e-38
Identity = 77/103 (74.76%), Postives = 92/103 (89.32%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT +VSVVDLTVRLEK A+Y++IKAA+KA +EG++KG+LGYTEDDVVSTDF G+  +SVFDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI HI+K
Sbjct:  229 MAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.880e-38
Identity = 74/103 (71.84%), Postives = 89/103 (86.41%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            +AFRVPT+DVSVVDL VRLEK+ASYDEI A +K  SEG LKGILG+T++ VVSTDF G + SS+FD+KAGIA+SK FVKL++WYDNEWGYS RV DL+V+ AK
Sbjct:  230 LAFRVPTLDVSVVDLVVRLEKEASYDEIVATVKEASEGPLKGILGFTDESVVSTDFTGANESSIFDSKAGIAISKSFVKLIAWYDNEWGYSRRVCDLLVYAAK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.880e-38
Identity = 76/102 (74.51%), Postives = 87/102 (85.29%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            MAFRVPT DVSVVDLTV+L K  +Y++IKAAIKA SEG +KG+LGYTED VVSTDF GD+ SS+FDA AGI LS +FVKLVSWYDNEWGYS RVVDL+ + A
Sbjct:  231 MAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAYTA 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.290e-37
Identity = 76/103 (73.79%), Postives = 87/103 (84.47%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+ RVPT +VSVVDLT RLEK A+YDEIK A+K  SEG LKG+LGYTEDDVVS+D  GD  SS+FDAKAGIAL+  FVKLVSWYDNEWGYS RV+DLI +IA+
Sbjct:  231 MSMRVPTSNVSVVDLTARLEKAATYDEIKQAVKEASEGPLKGVLGYTEDDVVSSDLNGDPHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVIDLIAYIAQ 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.290e-37
Identity = 76/103 (73.79%), Postives = 89/103 (86.41%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPTVDVSVVDLTVR  KD +YDEIKAAIK  SEG++KGIL YTED VVSTDF+GD+ SS+FDA AGI LS +FVKLVSWYDNE+G+S RVVD++  ++K
Sbjct:  229 MAFRVPTVDVSVVDLTVRFAKDVTYDEIKAAIKKASEGEMKGILAYTEDAVVSTDFLGDTHSSIFDASAGIQLSPRFVKLVSWYDNEYGFSARVVDMVELVSK 331          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P1_SHIFL7.565e-3874.76Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_SALTY7.565e-3874.76Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI7.565e-3874.76Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_ECOLI7.565e-3874.76Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL67.565e-3874.76Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO577.565e-3874.76Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_SCHCO9.880e-3871.84Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P1_SCHPO9.880e-3874.51Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P_MONAN1.290e-3773.79Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P1_CANGA1.290e-3773.79Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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