CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.685e-37
Identity = 77/103 (74.76%), Postives = 88/103 (85.44%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+ RVPTVDVSVVDLTVRL+K A+Y+EI  AIKA S G+LKGILGYTED VVSTDF+G   SS+FD KAGI LS  FVKL+SWYDNE+GYSTRVVDL+ H+AK
Sbjct:  230 MSLRVPTVDVSVVDLTVRLKKSATYEEISEAIKAASNGELKGILGYTEDAVVSTDFLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYSTRVVDLLEHVAK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.685e-37
Identity = 73/103 (70.87%), Postives = 87/103 (84.47%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+ RVPT +VSVVDLTVR+EK A+YDEIK AIK  +EG LKG+L YTEDD VSTD +G+  SS+FDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H+AK
Sbjct:  230 MSMRVPTANVSVVDLTVRIEKGATYDEIKQAIKEAAEGPLKGVLAYTEDDFVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.201e-37
Identity = 77/103 (74.76%), Postives = 86/103 (83.50%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MA RVPT +VSVVDLT RLEK  SYDEIK A+K  SE +LKGILGYTEDD+VS+D  GD  SS+FDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI +I+K
Sbjct:  230 MAMRVPTSNVSVVDLTCRLEKATSYDEIKKALKDASENELKGILGYTEDDIVSSDLNGDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDLIAYISK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.875e-37
Identity = 75/103 (72.82%), Postives = 88/103 (85.44%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MA RVPT +VSVVDLT R EK  +YD+IKAA+KA SEG+LKGILGY+ED +VSTD  GD RSS+FDA AGIAL+ +FVKL+SWYDNEWGYS RV+DLI +IAK
Sbjct:  231 MAMRVPTANVSVVDLTCRTEKPVTYDQIKAAVKAASEGELKGILGYSEDALVSTDLNGDPRSSIFDASAGIALNDRFVKLISWYDNEWGYSRRVLDLIAYIAK 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.755e-37
Identity = 76/105 (72.38%), Postives = 88/105 (83.81%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPT +VSVVDLT RL+K A YD+IKAAIK  SEG +KGILGYT+D VVSTDF GD+ SS+FDA AGIAL++ FVKLVSWYDNE GYS RVVDL+ H+A  +
Sbjct:  229 MAFRVPTPNVSVVDLTCRLQKPAKYDDIKAAIKTASEGPMKGILGYTQDQVVSTDFNGDTHSSIFDADAGIALNENFVKLVSWYDNECGYSNRVVDLVCHMASKE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.904e-37
Identity = 75/103 (72.82%), Postives = 87/103 (84.47%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT +VSVVDLT RLEK ASYDEIKA +K  SE +LKGILGYTED VVS DF+G+S SS+FDA AGI+L+  FVKLVSWYDNEWGYS R +DL+V +A+
Sbjct:  231 MAFRVPTTNVSVVDLTARLEKGASYDEIKAEVKRASENELKGILGYTEDAVVSQDFIGNSHSSIFDAAAGISLNNNFVKLVSWYDNEWGYSNRCLDLLVFMAQ 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.904e-37
Identity = 73/102 (71.57%), Postives = 92/102 (90.20%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            M+ RVPTVDVSVVDLTV+L KDA+YDEIKAA+K  +EG LKG++GYTED VVS+DF+ D+RSS+FDA+AGI LS +FVKL++WYDNE+GYSTRVVDL+ ++A
Sbjct:  230 MSLRVPTVDVSVVDLTVKLLKDATYDEIKAAVKEAAEGPLKGVVGYTEDQVVSSDFLTDNRSSIFDAEAGIWLSPRFVKLIAWYDNEYGYSTRVVDLLEYVA 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.904e-37
Identity = 75/103 (72.82%), Postives = 90/103 (87.38%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPTVDVSVVDLTV+L K A+Y+EIKA +K  SE +LKG++GYTED VVS+DF+GD+ SS+FDA AGI LS +FVKLVSWYDNE+GYSTRVVDL+  +AK
Sbjct:  228 MAFRVPTVDVSVVDLTVKLAKPATYEEIKAVVKKASENELKGVMGYTEDAVVSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.904e-37
Identity = 75/103 (72.82%), Postives = 90/103 (87.38%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPTVDVSVVDLTV+L K A+Y+EIKA +K  SE +LKG++GYTED VVS+DF+GD+ SS+FDA AGI LS +FVKLVSWYDNE+GYSTRVVDL+  +AK
Sbjct:  228 MAFRVPTVDVSVVDLTVKLAKPATYEEIKAVVKKASENELKGVMGYTEDAVVSSDFLGDTHSSIFDAAAGIQLSPQFVKLVSWYDNEFGYSTRVVDLVELVAK 330          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.404e-37
Identity = 77/103 (74.76%), Postives = 88/103 (85.44%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT DVSVVDLT RL K ASY+EIKAA+KA + G LKGIL YTED+VVS+DFVG + SS+FDAKAGI+L+  FVKLVSWYDNE+GYS RVVDLI H+ K
Sbjct:  232 MAFRVPTPDVSVVDLTCRLGKGASYEEIKAAVKAAASGPLKGILEYTEDEVVSSDFVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVDLITHMHK 334          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_DEBHA1.685e-3774.76Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_COLLN1.685e-3770.87Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_ASPNG2.201e-3774.76Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_PARBA2.875e-3772.82Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_XENLA3.755e-3772.38Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_USTMA4.904e-3772.82Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_PICCI4.904e-3771.57Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P3_KLUMA4.904e-3772.82Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_KLUMA4.904e-3772.82Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_SCHMA6.404e-3774.76Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
back to top