CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.404e-37
Identity = 74/103 (71.84%), Postives = 90/103 (87.38%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            MAFRVPT +VSVVDLT RLEK ASY+ IKAA+K  SEG+LKGILGYTED++VS+D  G++ SS+FDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ ++AK
Sbjct:  230 MAFRVPTSNVSVVDLTCRLEKPASYETIKAALKEASEGELKGILGYTEDEIVSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVAK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.364e-37
Identity = 73/103 (70.87%), Postives = 88/103 (85.44%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            ++FRVPT+DVSVVDL VRLEK+A+YDEIKAA+K    G LKGIL YTED +VSTDF G++ SS+FDA AGIAL+K FVKL++WYDNEWGYS RVVDLI  +A+
Sbjct:  230 LSFRVPTLDVSVVDLVVRLEKEATYDEIKAAVKEAVAGPLKGILDYTEDALVSTDFTGNTHSSIFDASAGIALNKNFVKLIAWYDNEWGYSRRVVDLITFVAQ 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPT +VSVVDLT RLEK A YD+IK  +KA +EG LKGILGYTED VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VH+A  +
Sbjct:  229 MAFRVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.427e-36
Identity = 75/104 (72.12%), Postives = 91/104 (87.50%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEG-KLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+ RVPTVDVSVVDLTVR++  ASY++IKA +KA SE  +LKGILGYT++DVVSTDF+GD+ SS+FDAKAGI L+  FVKL+SWYDNE+GYS RVVDLIV +AK
Sbjct:  230 MSLRVPTVDVSVVDLTVRIKNGASYEDIKATMKAASESPELKGILGYTDEDVVSTDFIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVAK 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.427e-36
Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+ RVPT  VSVVDLTVR+EK ASYDEIK  IK  + G LKGIL YTEDDVVSTD  GD+ SS+FDAKAGI+L+K FVKLVSWYDNEWGYS RV+DL+ +I+K
Sbjct:  231 MSMRVPTATVSVVDLTVRIEKAASYDEIKEVIKKAANGPLKGILAYTEDDVVSTDMNGDNHSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLHYISK 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.863e-36
Identity = 74/104 (71.15%), Postives = 89/104 (85.58%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESE-GKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+ RVPT +VSVVDLT R EK  +Y++IK  IKA SE G+LKGILGYTEDD+VSTD +GD+ SS+FDAKAGIAL++ F+KLVSWYDNEWGYS RVVDLI +I+K
Sbjct:  231 MSMRVPTANVSVVDLTCRTEKAVTYEDIKKTIKAASEEGELKGILGYTEDDIVSTDLIGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWGYSRRVVDLIAYISK 334          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 3.178e-36
Identity = 76/105 (72.38%), Postives = 86/105 (81.90%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPT +VSVVDLT RLEK A YD+IK  +KA ++G LKGILGYTED VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VH+A  +
Sbjct:  229 MAFRVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.151e-36
Identity = 73/103 (70.87%), Postives = 87/103 (84.47%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+ RVPTV+VS+VD TVR  KD +YDE+KAAIK  SEG LKGIL YTEDD+VSTD + D  SS FDAKAGIAL+K FVK++SWYDNE+GYS RVVDLIV+++K
Sbjct:  229 MSVRVPTVNVSLVDFTVRFAKDVTYDEVKAAIKEASEGPLKGILAYTEDDIVSTDILTDPHSSTFDAKAGIALNKNFVKVMSWYDNEYGYSRRVVDLIVYVSK 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.422e-36
Identity = 74/102 (72.55%), Postives = 86/102 (84.31%), Query Frame = -2
Query:  372 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIA 677
            M+ R+PT DVSVVDLTVRL+K ASY+EI  AIK  SEG LKG+LGYTED VVSTDF+G S SS+FD KAGI LS  FVKL+SWYDNE+GYST+VVDL+ H+A
Sbjct:  230 MSLRLPTTDVSVVDLTVRLKKAASYEEIAPAIKKASEGPLKGVLGYTEDAVVSTDFLGSSYSSIFDEKAGILLSPTFVKLISWYDNEYGYSTKVVDLLEHVA 331          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.081e-36
Identity = 69/103 (66.99%), Postives = 88/103 (85.44%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+ RVPT +VSVVDLTVR+EK A+YDEIKA +K  + G L GILGYTEDD+VS+D  G++ SS+FDAKAGI+L+K FVKL++WYDNEWGYS RV+DL+ ++AK
Sbjct:  230 MSMRVPTPNVSVVDLTVRIEKGATYDEIKATVKEAANGSLAGILGYTEDDIVSSDMNGNTNSSIFDAKAGISLNKNFVKLIAWYDNEWGYSRRVLDLLAYVAK 332          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_PODAN6.404e-3771.84Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_OMPOL8.364e-3770.87Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_COTJA1.092e-3673.33Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_YARLI1.427e-3672.12Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_SCLSC1.427e-3672.82Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P_ASPOR1.863e-3671.15Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_CHICK3.178e-3672.38Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P1_TRIKO4.151e-3670.87Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P_CANAL5.422e-3672.55Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P_CLAPU7.081e-3666.99Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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