CB304472

Overview
NameCB304472
Unique NameCB304472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:8..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.248e-36
Identity = 73/103 (70.87%), Postives = 86/103 (83.50%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+ RVPT +VSVVDLTVR+EK ASYDEIK  +K  SEG L GIL YTED+VVS+D  G+  SS+FDAKAGI+L+K FVKLVSWYDNEWGYS RV+DLI ++AK
Sbjct:  230 MSMRVPTANVSVVDLTVRIEKGASYDEIKEVVKKASEGPLAGILAYTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYVAK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.248e-36
Identity = 74/105 (70.48%), Postives = 86/105 (81.90%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPT +VSVVDLTVRLEK A YDEIK  +KA ++G +KGILGYTE  VVSTDF GD RSS+FDA AGIAL+  FVKLV+WYDNE+GYS RV DL+ H+A  +
Sbjct:  229 MAFRVPTPNVSVVDLTVRLEKPAKYDEIKKVVKAAADGPMKGILGYTEHQVVSTDFNGDCRSSIFDAGAGIALNDHFVKLVTWYDNEFGYSNRVCDLMAHMASKE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.248e-36
Identity = 71/103 (68.93%), Postives = 87/103 (84.47%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+ RVPT +VSVVDLTVR+EK A+Y++IK A+K  ++G LKG+L YTEDDVVSTD  G+  SS+FDAKAGI+L+  FVKLVSWYDNEWGYS RV+DLI H+AK
Sbjct:  230 MSMRVPTSNVSVVDLTVRIEKGATYEQIKTAVKKAADGPLKGVLAYTEDDVVSTDMNGNPNSSIFDAKAGISLNDHFVKLVSWYDNEWGYSRRVLDLISHVAK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.208e-35
Identity = 75/105 (71.43%), Postives = 85/105 (80.95%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPT +VSVVDLT RLEK A YD+IK  +KA ++G LKGIL YTED VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VH+A  +
Sbjct:  229 MAFRVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILAYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEYGYSNRVVDLMVHMASKE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.577e-35
Identity = 69/103 (66.99%), Postives = 89/103 (86.41%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+FRVP+ +VSV+DLTVRLEK ASY+EI +AIK  ++G+LKGI+ YT D+VVSTD +G++ SS+FD KAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H+AK
Sbjct:  230 MSFRVPSANVSVIDLTVRLEKAASYEEITSAIKKAADGELKGIMAYTSDEVVSTDMLGNNNSSIFDIKAGISLNPNFVKLVSWYDNEWGYSRRVLDLLEHVAK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 149.443 bits (376), Expect = 1.577e-35
Identity = 75/105 (71.43%), Postives = 84/105 (80.00%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPT +VSVVDLT RLEK A YDEIK  +K  SEG LKGILGYTED VVS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VH+A  +
Sbjct:  218 MAFRVPTPNVSVVDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 322          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.577e-35
Identity = 75/103 (72.82%), Postives = 83/103 (80.58%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            +AFRVPTVDVSVVDL VRLEK ASYDEIK AIK  SE   KGILGYTE+ VVSTDF G+  SS+FD  AGIAL+K FVKL+SWYDNEWGYS R  DL+ + AK
Sbjct:  230 LAFRVPTVDVSVVDLVVRLEKPASYDEIKQAIKEASETTHKGILGYTEEKVVSTDFTGNDNSSIFDRDAGIALNKTFVKLISWYDNEWGYSRRCCDLLGYAAK 332          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 149.443 bits (376), Expect = 1.577e-35
Identity = 75/105 (71.43%), Postives = 84/105 (80.00%), Query Frame = -2
Query:  363 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAKTQ 677
            MAFRVPT +VSVVDLT RLEK A YDEIK  +K  SEG LKGILGYTED VVS DF  D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+VH+A  +
Sbjct:  229 MAFRVPTPNVSVVDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.060e-35
Identity = 73/101 (72.28%), Postives = 87/101 (86.14%), Query Frame = -2
Query:  375 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHI 677
            MAFRVPT +VSVVDLTVRL K A+YDEIKA +   S+G +KGIL YTE++VVSTDFVGD+ SSVFDAKAGI L+ KFVKL+SWYDNE+GYS RV+DLI ++
Sbjct:  228 MAFRVPTPNVSVVDLTVRLGKSATYDEIKAKVLEASQGPMKGILDYTEEEVVSTDFVGDTHSSVFDAKAGIPLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CB304472 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35
Identity = 71/103 (68.93%), Postives = 88/103 (85.44%), Query Frame = -2
Query:  369 MAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSVFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHIAK 677
            M+FRVPT DVSVVDLTV LEK ASYDEI A +KA+S+G LKG+LGYTED VV+TDF GD+R+S+FDA+AGIAL   F+K+VSWYDNEWGYS +V+++   +AK
Sbjct:  230 MSFRVPTSDVSVVDLTVELEKAASYDEICAEMKAQSQGALKGVLGYTEDKVVATDFRGDARTSIFDAEAGIALDGTFIKVVSWYDNEWGYSNKVLEMARVVAK 332          
The following BLAST results are available for this feature:
BLAST of CB304472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_SORMA9.248e-3670.87Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3P_DANRE9.248e-3670.48Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3P_CRYPA9.248e-3668.93Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P_COLLI1.208e-3571.43Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]
G3P_TRIAT1.577e-3566.99Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_SHEEP1.577e-3571.43Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_PHACH1.577e-3572.82Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]
G3P_BOVIN1.577e-3571.43Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P_GLOMM2.060e-3572.28Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3P_RALSO2.691e-3568.93Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304472 ID=CB304472; Name=CB304472; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTACATAATCGTGAGAG
AATGAAATAACAGCTGAAGAACAGGGCTTCGATACTAACTAGATGAAAAA
TTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAACAAAACAT
AAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCAC
AACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAAACAATTTT
ATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACATTTAGCGCA
AAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACG
CCGAGTAAGTTACTGGGTCTTCGCTATGTGGACAATCAAATCCACCACAC
GAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAAT
TTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGACACTTGACCTACT
GTCACCAACAAAGTCGGTGGATACCACATCATCCTCAGTGTATCCCAAGA
TACCCTTTAGTTTCCCCTCTGACTCCGCCTTGATGGCAGCTTTGATTTCA
TCATAAGAAGCGTCCTTCTCCAGCCTCACTGTGAGGTCAACCACTGAGAC
ATCAACAGTGGGTACACGGAAAGCCATA
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