CB305012 | Citrus Genome Database

Overview


Name	CB305012
Unique Name	CB305012
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	579

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2325	contig	Csv1_Contig2325:131..710.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.000e-55
Identity = 69/76 (90.79%), Postives = 72/76 (94.74%), Query Frame = -1

Query:  217 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 444
            KF+ELVTKIDRRSGKELE  PKFLKNGDAG+VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK VEKKDP
Sbjct:  359 KFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDMRQTVAVGVIKGVEKKDP 434

HSP 2 Score: 95.9005 bits (237), Expect = 2.000e-55
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = -3

Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            SNSKDDPA+EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK
Sbjct:  315 SNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 359

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.280e-54
Identity = 69/76 (90.79%), Postives = 74/76 (97.37%), Query Frame = -1

Query:  217 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 444
            KF+EL+TKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETF++YPPLGRFAVR MRQTVAVGVIK VEKKDP
Sbjct:  359 KFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGVIKAVEKKDP 434

HSP 2 Score: 91.2781 bits (225), Expect = 1.280e-54
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = -3

Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            SNSKDDPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK
Sbjct:  315 SNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 359

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.365e-53
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = -1

Query:  217 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 444
            KF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK+VEKK+P
Sbjct:  359 KFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEP 434

HSP 2 Score: 92.4337 bits (228), Expect = 2.365e-53
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = -3

Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            SNSKDDPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVK
Sbjct:  315 SNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVK 359

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.365e-53
Identity = 66/76 (86.84%), Postives = 71/76 (93.42%), Query Frame = -1

Query:  217 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 444
            KF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAVGVIK+VEKK+P
Sbjct:  359 KFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEP 434

HSP 2 Score: 92.4337 bits (228), Expect = 2.365e-53
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = -3

Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            SNSKDDPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVK
Sbjct:  315 SNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVK 359

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.716e-44
Identity = 55/75 (73.33%), Postives = 65/75 (86.67%), Query Frame = -1

Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF+E+ +KIDRRSGKELEK PK +K+GDA +V+M+P KPM VE F+DY PLGRFAVRDMRQTVAVG+IK V KKD
Sbjct:  359 KFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKD 433

HSP 2 Score: 83.1889 bits (204), Expect = 1.716e-44
Identity = 36/44 (81.82%), Postives = 42/44 (95.45%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            N+K+DP +EAA+FT+QVII+NHPGQIGNGYAPVLDCHTSHIA K
Sbjct:  316 NTKNDPPKEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACK 359

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.235e-44
Identity = 57/75 (76.00%), Postives = 67/75 (89.33%), Query Frame = -1

Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF+EL+ KIDRRSGK+LE  PKF+K+GD+ +VKMIP+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  369 KFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443

HSP 2 Score: 79.7221 bits (195), Expect = 2.235e-44
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = -3

Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            S+SK+DPA+EA +FT+QVI++NHPGQIG GYAPVLDCHT+HIA K
Sbjct:  325 SDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACK 369

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.913e-44
Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = -1

Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  369 KFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443

HSP 2 Score: 78.1814 bits (191), Expect = 2.913e-44
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = -3

Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            S+SK+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA K
Sbjct:  325 SDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 369

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.913e-44
Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = -1

Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KFSEL+ KIDRRSGK++E  PKF+K+GD+ +VKM+P+KPM VE ++DYPPLGRFAVRDMRQTVAVGVIK VEK D
Sbjct:  369 KFSELIEKIDRRSGKKMEDSPKFVKSGDSAIVKMVPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVIKAVEKVD 443

HSP 2 Score: 78.1814 bits (191), Expect = 2.913e-44
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = -3

Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            S+SK+DPA+E+A+FT+QVII+NHPGQI  GYAPVLDCHT+HIA K
Sbjct:  325 SDSKNDPAKESASFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 369

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.426e-43
Identity = 53/75 (70.67%), Postives = 68/75 (90.67%), Query Frame = -1

Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KFSEL+ KIDRR+GK +E  PKF+K+GDA +VK++P+KPM VE++++YPPLGRFAVRDMRQTVAVGVIK+VEK +
Sbjct:  371 KFSELIEKIDRRTGKTMEAAPKFVKSGDAAIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGVIKSVEKTE 445

HSP 2 Score: 79.337 bits (194), Expect = 1.426e-43
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = -3

Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            S+SK+DPA+EAA+F +QVI++NHPGQIG GYAPVLDCHT+HIA K
Sbjct:  327 SDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACK 371

[Close]

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A0_XENLA (Elongation factor 1-alpha, somatic form OS=Xenopus laevis GN=eef1as PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.859e-43
Identity = 60/74 (81.08%), Postives = 65/74 (87.84%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK VEKK
Sbjct:  371 KFAELKEKIDRRSGKKLEDNPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVEKK 444

HSP 2 Score: 75.485 bits (184), Expect = 1.859e-43
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP  EA +FT+QVII+NHPGQIG GYAPVLDCHT+HIA K
Sbjct:  328 DSKNDPPMEAGSFTAQVIILNHPGQIGAGYAPVLDCHTAHIACK 371

The following BLAST results are available for this feature:

BLAST of CB305012 vs. ExPASy Swiss-Prot

BLAST of CB305012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158


Match Name	E-value	Identity	Description
EF1A_WHEAT	2.000e-55	90.79	Elongation factor 1-alpha OS=Triticum aestivum GN=...	[more]
EF1A1_DAUCA	1.280e-54	90.79	Elongation factor 1-alpha OS=Daucus carota PE=3 SV...	[more]
EF1A2_HORVU	2.365e-53	86.84	Elongation factor 1-alpha OS=Hordeum vulgare GN=BL...	[more]
EF1A1_HORVU	2.365e-53	86.84	Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ...	[more]
EF1A_TRYBB	1.716e-44	73.33	Elongation factor 1-alpha OS=Trypanosoma brucei br...	[more]
EF1A_ABSGL	2.235e-44	76.00	Elongation factor 1-alpha OS=Absidia glauca GN=TEF...	[more]
EF1A2_RHIRA	2.913e-44	74.67	Elongation factor 1-alpha OS=Rhizomucor racemosus ...	[more]
EF1A1_RHIRA	2.913e-44	74.67	Elongation factor 1-alpha OS=Rhizomucor racemosus ...	[more]
EF1A_PIRIN	1.426e-43	70.67	Elongation factor 1-alpha OS=Piriformospora indica...	[more]
EF1A0_XENLA	1.859e-43	81.08	Elongation factor 1-alpha, somatic form OS=Xenopus...	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0003_IIaR_G01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_G01 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB305012 ID=CB305012; Name=CB305012; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAACTTACCAAAAAAAAAC
TCTGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAA
ACTAAAACACGACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTAT
AGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGG
TGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCA
ACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGG
GTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAA
CCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCC
TTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTTGACGG
CAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATC
TGGCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTC
CCTGGCTGGATCATCCTTCGAGTTGGAAG