CB305012

Overview
NameCB305012
Unique NameCB305012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:131..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1AS_PORPU (Elongation factor 1-alpha S OS=Porphyra purpurea GN=TEF-S PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.468e-17
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKEL-------------EKEPK------FLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF+ +++K D+R GK+              + EP+        K G++  V + PTK MVVE +S Y PLGRFAVRDM++TVAVGVI+ V+ ++
Sbjct:  386 KFASILSKKDKR-GKQTHDVSDDTEWATKDDAEPRNNRMNIAAKTGESVNVWLQPTKAMVVEAYSMYSPLGRFAVRDMKKTVAVGVIQCVQPRN 478          

HSP 2 Score: 47.3654 bits (111), Expect = 1.468e-17
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            ++K+DP      F + VII +H   I NGY PVLDCHT+HIA K
Sbjct:  344 DTKNDPPIPTECFLANVIIQDHKN-IRNGYTPVLDCHTAHIACK 386          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_HALSA (Elongation factor 1-alpha OS=Halobacterium salinarium GN=tuf PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.916e-17
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = -1
Query:  226 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 423
            K+D  SG+  E+ P F+++GDA +V + P KP+ +E  S+ P LG FAVRDM QT+A G + +V++
Sbjct:  355 KMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKVLDVDE 420          

HSP 2 Score: 43.5134 bits (101), Expect = 1.916e-17
Identity = 18/42 (42.86%), Postives = 24/42 (57.14%), Query Frame = -3
Query:  440 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 565
            DDP   A  F +QV++M HP  I  GY PV   HT+ +A  +
Sbjct:  308 DDPPSVADTFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTI 349          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_HALS3 (Elongation factor 1-alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=tuf PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.916e-17
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = -1
Query:  226 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 423
            K+D  SG+  E+ P F+++GDA +V + P KP+ +E  S+ P LG FAVRDM QT+A G + +V++
Sbjct:  355 KMDPASGETQEENPDFIQSGDAAVVTVRPQKPLSLEPSSEIPELGSFAVRDMGQTIAAGKVLDVDE 420          

HSP 2 Score: 43.5134 bits (101), Expect = 1.916e-17
Identity = 18/42 (42.86%), Postives = 24/42 (57.14%), Query Frame = -3
Query:  440 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 565
            DDP   A  F +QV++M HP  I  GY PV   HT+ +A  +
Sbjct:  308 DDPPSVADTFQAQVVVMQHPSVITAGYTPVFHAHTAQVACTI 349          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_HALWD (Elongation factor 1-alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=tuf PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.202e-16
Identity = 30/67 (44.78%), Postives = 47/67 (70.15%), Query Frame = -1
Query:  223 KIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 423
            K+D  SG+  E++P F+K+GDA +V + P KP+ +E  ++ P LG FAVRDM QT+A G +  V+++
Sbjct:  355 KLDPASGEVAEEDPDFIKSGDAAVVTVRPQKPLSIEPSNEIPELGSFAVRDMGQTIAAGKVLEVDER 421          

HSP 2 Score: 38.1206 bits (87), Expect = 1.202e-16
Identity = 15/36 (41.67%), Postives = 21/36 (58.33%), Query Frame = -3
Query:  440 AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 547
            A  F +QV++M HP  I  GY PV   HT+ +A  +
Sbjct:  314 AETFKAQVVVMQHPSVITAGYTPVFHAHTAQVACTI 349          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.297e-14
Identity = 33/83 (39.76%), Postives = 57/83 (68.67%), Query Frame = -1
Query:  226 LTATPPTLPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 474
            L A    +P +F +++ K+D R+G  +E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ +++K
Sbjct:  344 LHAHTAQIPVRFEQILAKVDPRTGNIVEENPQFIKTGDSAIVVLRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQK 426          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAB (Elongation factor 1-alpha OS=Pyrococcus abyssi GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.297e-14
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  226 LTATPPTLPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 474
            L A    +P +F +L+ KID R+G   E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ +++K
Sbjct:  344 LHAHTAQVPVRFEQLLAKIDPRTGNITEENPQFIKTGDSAIVVLRPMKPVVLEPVKELPQLGRFAIRDMGMTIAAGMVISIQK 426          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_PYRWO (Elongation factor 1-alpha OS=Pyrococcus woesei GN=tuf PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 33/83 (39.76%), Postives = 57/83 (68.67%), Query Frame = -1
Query:  226 LTATPPTLPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 474
            L A    +P +F +L+ K+D ++G  +E+ P+F+K GDA +V + P KP+V+E   + P LGRFA+RDM  T+A G++ ++++
Sbjct:  346 LHAHTAQVPVRFEQLLAKLDPKTGNIVEENPQFIKTGDAAIVILRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQR 428          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_PYRFU (Elongation factor 1-alpha OS=Pyrococcus furiosus GN=tuf PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 33/83 (39.76%), Postives = 57/83 (68.67%), Query Frame = -1
Query:  226 LTATPPTLPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 474
            L A    +P +F +L+ K+D ++G  +E+ P+F+K GDA +V + P KP+V+E   + P LGRFA+RDM  T+A G++ ++++
Sbjct:  344 LHAHTAQVPVRFEQLLAKLDPKTGNIVEENPQFIKTGDAAIVILRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQR 426          
The following BLAST results are available for this feature:
BLAST of CB305012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
EF1AS_PORPU1.468e-1741.49Elongation factor 1-alpha S OS=Porphyra purpurea G... [more]
EF1A_HALSA1.916e-1745.45Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALS31.916e-1745.45Elongation factor 1-alpha OS=Halobacterium salinar... [more]
EF1A_HALWD1.202e-1644.78Elongation factor 1-alpha OS=Haloquadratum walsbyi... [more]
EF1A_PYRHO3.297e-1439.76Elongation factor 1-alpha OS=Pyrococcus horikoshii... [more]
EF1A_PYRAB3.297e-1442.17Elongation factor 1-alpha OS=Pyrococcus abyssi GN=... [more]
EF1A_PYRWO9.593e-1439.76Elongation factor 1-alpha OS=Pyrococcus woesei GN=... [more]
EF1A_PYRFU9.593e-1439.76Elongation factor 1-alpha OS=Pyrococcus furiosus G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_G01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_G01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305012 ID=CB305012; Name=CB305012; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAACTTACCAAAAAAAAAC
TCTGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAA
ACTAAAACACGACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTAT
AGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGG
TGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCA
ACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGG
GTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAA
CCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCC
TTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTTGACGG
CAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATC
TGGCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTC
CCTGGCTGGATCATCCTTCGAGTTGGAAG
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