CB305012 | Citrus Genome Database

Overview


Name	CB305012
Unique Name	CB305012
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	579

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2325	contig	Csv1_Contig2325:131..710.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_PONAB (Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF1A1 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.014e-42
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 74.3294 bits (181), Expect = 2.014e-42
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA K
Sbjct:  328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 371

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_PANTR (Elongation factor 1-alpha 1 OS=Pan troglodytes GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.014e-42
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 74.3294 bits (181), Expect = 2.014e-42
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA K
Sbjct:  328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 371

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_MOUSE (Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef1a1 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 2.014e-42
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 74.3294 bits (181), Expect = 2.014e-42
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA K
Sbjct:  328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 371

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_HUMAN (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.014e-42
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 74.3294 bits (181), Expect = 2.014e-42
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA K
Sbjct:  328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 371

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_FELCA (Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.014e-42
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 74.3294 bits (181), Expect = 2.014e-42
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA K
Sbjct:  328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 371

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_CRIGR (Elongation factor 1-alpha 1 OS=Cricetulus griseus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.014e-42
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 74.3294 bits (181), Expect = 2.014e-42
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA K
Sbjct:  328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 371

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_BOVIN (Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.014e-42
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = -1

Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  371 KFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444

HSP 2 Score: 74.3294 bits (181), Expect = 2.014e-42
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP  EAA FT+QVII+NHPGQI  GYAPVLDCHT+HIA K
Sbjct:  328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK 371

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.014e-42
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = -1

Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRFAVRDMRQTVAVGVIK V K D
Sbjct:  371 KFAELKEKVDRRTGKKVEDPPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDD 445

HSP 2 Score: 77.7962 bits (190), Expect = 2.014e-42
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = -3

Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            S+SK+DPA+E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA K
Sbjct:  327 SDSKNDPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACK 371

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_ONCVO (Elongation factor 1-alpha OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.624e-42
Identity = 54/75 (72.00%), Postives = 67/75 (89.33%), Query Frame = -1

Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF+EL  K+DRRSGK++E  PK LK+GDAG++ +IPTKP+ VETF++YPPLGRFAVRDMRQTVAVGVIKNV+K +
Sbjct:  371 KFAELKEKVDRRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVIKNVDKSE 445

HSP 2 Score: 74.3294 bits (181), Expect = 2.624e-42
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = -3

Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            S+SK+DPA+E   FT+QVIIMNHPGQI  GY PVLDCHT+HIA K
Sbjct:  327 SDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACK 371

BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.419e-42
Identity = 57/75 (76.00%), Postives = 67/75 (89.33%), Query Frame = -1

Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF+EL+ KIDRRSGK+LE  PKF+K+GDA +VK+IP KPMVVE FS+YPPLGRFAVRDMRQTVAVGVIK V+ K+
Sbjct:  371 KFNELIEKIDRRSGKKLEDNPKFVKSGDAAIVKLIPQKPMVVEPFSNYPPLGRFAVRDMRQTVAVGVIKAVDTKE 445

HSP 2 Score: 72.4034 bits (176), Expect = 3.419e-42
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = -3

Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP + AA+F +QVII+NHPGQI  GYAPVLDCHT+HIA K
Sbjct:  328 DSKNDPPKAAASFNAQVIILNHPGQINQGYAPVLDCHTAHIACK 371

The following BLAST results are available for this feature:

BLAST of CB305012 vs. ExPASy Swiss-Prot

BLAST of CB305012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158


Match Name	E-value	Identity	Description
EF1A1_PONAB	2.014e-42	78.38	Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF...	[more]
EF1A1_PANTR	2.014e-42	78.38	Elongation factor 1-alpha 1 OS=Pan troglodytes GN=...	[more]
EF1A1_MOUSE	2.014e-42	78.38	Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef...	[more]
EF1A1_HUMAN	2.014e-42	78.38	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF...	[more]
EF1A1_FELCA	2.014e-42	78.38	Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1...	[more]
EF1A1_CRIGR	2.014e-42	78.38	Elongation factor 1-alpha 1 OS=Cricetulus griseus ...	[more]
EF1A1_BOVIN	2.014e-42	78.38	Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A...	[more]
EF1A2_OSCTI	2.014e-42	72.00	Elongation factor 1-alpha 2 OS=Oscheius tipulae GN...	[more]
EF1A_ONCVO	2.624e-42	72.00	Elongation factor 1-alpha OS=Onchocerca volvulus P...	[more]
EF1A_ORYLA	3.419e-42	76.00	Elongation factor 1-alpha OS=Oryzias latipes GN=ee...	[more]

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Properties


Property Name	Value
Genbank description	FLAVEDO0003_IIaR_G01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_G01 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB305012 ID=CB305012; Name=CB305012; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAACTTACCAAAAAAAAAC
TCTGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAA
ACTAAAACACGACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTAT
AGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGG
TGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCA
ACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGG
GTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAA
CCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCC
TTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTTGACGG
CAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATC
TGGCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTC
CCTGGCTGGATCATCCTTCGAGTTGGAAG