CB305012

Overview
NameCB305012
Unique NameCB305012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:131..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.009e-40
Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF  +  KIDRR+GK  E+ PKF+KNGDA +V +IPTK + VE F +YPPLGR+AVRDM+QTVAVGVIK VEKKD
Sbjct:  360 KFETIHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          

HSP 2 Score: 75.0998 bits (183), Expect = 4.009e-40
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = -3
Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            S++K+DPA+EAA F SQVIIMNHPGQI  GY PVLDCHT+HIA K
Sbjct:  316 SDAKNDPAKEAATFYSQVIIMNHPGQIQAGYTPVLDCHTAHIACK 360          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_ASHGO (Elongation factor 1-alpha OS=Ashbya gossypii GN=TEF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.553e-39
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF EL+ K DRR+GK+LE  PKFLK GDA MVK +P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+V K D
Sbjct:  369 KFDELLEKNDRRTGKKLEDSPKFLKAGDAAMVKFVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVVKSD 443          

HSP 2 Score: 65.855 bits (159), Expect = 2.553e-39
Identity = 27/44 (61.36%), Postives = 36/44 (81.82%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP + A +F + VI++NHPGQI  GY+PVLDCHT+HIA K
Sbjct:  326 DSKNDPPKAAESFNATVIVLNHPGQISAGYSPVLDCHTAHIACK 369          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.336e-39
Identity = 52/75 (69.33%), Postives = 64/75 (85.33%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF+ L  ++DRRSGK LE +PKF+K GDA ++KM P+KPM VE+F +YPPLGRFAVRDM+QTVAVGVIK VEKK+
Sbjct:  256 KFAVLEKRLDRRSGKALEDDPKFIKTGDAAIIKMEPSKPMCVESFIEYPPLGRFAVRDMKQTVAVGVIKGVEKKE 330          

HSP 2 Score: 70.0922 bits (170), Expect = 3.336e-39
Identity = 29/45 (64.44%), Postives = 40/45 (88.89%), Query Frame = -3
Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            S+SK+DPA+ AA+F +QVI+++HPGQI  GY+PV+DCHT+HIA K
Sbjct:  212 SDSKNDPAKAAASFQAQVIVLHHPGQINPGYSPVVDCHTAHIACK 256          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.333e-39
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = -1
Query:  226 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 444
            KF+EL+ KIDRRSGK +E EPK +K+GDA ++ +IP+K M VE+FS YPPLGRFAVRDMRQTVAVGVIK V+K
Sbjct:  373 KFAELLEKIDRRSGKVIETEPKMVKSGDAAIINLIPSKGMCVESFSQYPPLGRFAVRDMRQTVAVGVIKEVDK 445          

HSP 2 Score: 71.2478 bits (173), Expect = 4.333e-39
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = -3
Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            S+SK+DPA EAA+F +QVII+NHPG+I  GY PVLDCHT+HIA K
Sbjct:  329 SDSKNDPAIEAASFKAQVIILNHPGEIHAGYQPVLDCHTAHIACK 373          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_DROME (Elongation factor 1-alpha 1 OS=Drosophila melanogaster GN=Ef1alpha48D PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.119e-38
Identity = 49/75 (65.33%), Postives = 62/75 (82.67%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF+E+  K+DRRSGK  E+ PKF+K+GDA +V ++P+KP+ VE F ++PPLGRFAVRDMRQTVAVGVIK V  KD
Sbjct:  371 KFAEIKEKVDRRSGKTTEENPKFIKSGDAAIVNLVPSKPLCVEAFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKD 445          

HSP 2 Score: 71.2478 bits (173), Expect = 2.119e-38
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK +P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA K
Sbjct:  328 DSKANPPKGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACK 371          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.119e-38
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            +F EL+ K DRRSGK+LE  PKFLK+GDA +VK +P+KPM VE FS+YPPLGRFAVRDMRQTVAVGVIK+V+K +
Sbjct:  369 RFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTE 443          

HSP 2 Score: 63.5438 bits (153), Expect = 2.119e-38
Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            ++K+DP +  A+F + VI++NHPGQI  GY+PVLDCHT+HIA +
Sbjct:  326 DAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACR 369          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.036e-37
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KFSE+  K DRR+GK  E EPK +K+GDA ++ ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIK+V  K+
Sbjct:  371 KFSEIKEKCDRRTGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVNFKE 445          

HSP 2 Score: 73.559 bits (179), Expect = 1.036e-37
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK++P R AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA K
Sbjct:  328 DSKNNPPRGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACK 371          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.758e-37
Identity = 49/75 (65.33%), Postives = 60/75 (80.00%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF+E+  K DRR+GK  E+ PK +K+GDA +V + PTKPM VE F ++PPLGRFAVRDMRQTVAVGVIK+V  KD
Sbjct:  371 KFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSVTFKD 445          

HSP 2 Score: 73.1738 bits (178), Expect = 1.758e-37
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+ P R AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA K
Sbjct:  328 DSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 371          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.985e-37
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF  +  K+D+RSGK LE+ PK +K+GDA +V M P KP+ VE F+DYPPLGRFAVRDM+QTVAVGVIK+V KK+
Sbjct:  355 KFQTITAKMDKRSGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKE 429          

HSP 2 Score: 69.3218 bits (168), Expect = 2.985e-37
Identity = 27/45 (60.00%), Postives = 40/45 (88.89%), Query Frame = -3
Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            S++K+DPA+   +FT+QVI++NHPG+I NGY+PV+DCHT+HI+ K
Sbjct:  311 SDAKNDPAKGCEDFTAQVIVLNHPGEIKNGYSPVVDCHTAHISCK 355          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.889e-37
Identity = 50/74 (67.57%), Postives = 63/74 (85.14%), Query Frame = -1
Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            KF EL+TK D+RSGK  E+ PKFLK GDAG++++ P+KP+ VETF+ Y PLGRFAVRDMRQTVAVGVI+ ++KK
Sbjct:  359 KFEELLTKADKRSGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEIKKK 432          

HSP 2 Score: 65.855 bits (159), Expect = 3.889e-37
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = -3
Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            S+SK+DPA +  +F S  I+MNHPG+I  GY PV+DCHT+HIA K
Sbjct:  315 SDSKNDPATDTESFVSHTIVMNHPGEIKAGYTPVIDCHTAHIACK 359          
The following BLAST results are available for this feature:
BLAST of CB305012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
EF1A_TETPY4.009e-4068.00Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_ASHGO2.553e-3974.67Elongation factor 1-alpha OS=Ashbya gossypii GN=TE... [more]
EF1A_EIMBO3.336e-3969.33Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A_HYDAT4.333e-3971.23Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A1_DROME2.119e-3865.33Elongation factor 1-alpha 1 OS=Drosophila melanoga... [more]
EF1A_YEAST2.119e-3872.00Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A2_DROME1.036e-3762.67Elongation factor 1-alpha 2 OS=Drosophila melanoga... [more]
EF1A_APIME1.758e-3765.33Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A_CRYPV2.985e-3765.33Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A1_EUPCR3.889e-3767.57Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_G01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_G01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305012 ID=CB305012; Name=CB305012; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAACTTACCAAAAAAAAAC
TCTGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAA
ACTAAAACACGACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTAT
AGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGG
TGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCA
ACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGG
GTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAA
CCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCC
TTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTTGACGG
CAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATC
TGGCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTC
CCTGGCTGGATCATCCTTCGAGTTGGAAG
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