CB305012

Overview
NameCB305012
Unique NameCB305012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:131..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.596e-37
Identity = 46/75 (61.33%), Postives = 61/75 (81.33%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIK V  K+
Sbjct:  371 KFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKE 445          

HSP 2 Score: 72.4034 bits (176), Expect = 6.596e-37
Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA K
Sbjct:  328 DSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 371          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_RHYAM (Elongation factor 1-alpha (Fragment) OS=Rhynchosciara americana PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.460e-36
Identity = 48/75 (64.00%), Postives = 61/75 (81.33%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF+E+  K+DRRSGK  E  PK +K+GDA +V + P+KP+ VE+F ++PPLGRFAVRDMRQTVAVGVIK+V  KD
Sbjct:  320 KFAEIKXKVDRRSGKSTEDNPKAIKSGDAAIVILQPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVVFKD 394          

HSP 2 Score: 71.2478 bits (173), Expect = 1.460e-36
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK +P + A NFT+QVI++NHPGQI NGY PVLDCHT+HIA K
Sbjct:  277 DSKANPPKGAENFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 320          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.471e-36
Identity = 44/75 (58.67%), Postives = 63/75 (84.00%), Query Frame = -1
Query:  220 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 444
            KF  + +KID+RSGK +E+ PK +K+GD+ +V + P KPMVVETF++YPPLGRFA+RDMRQT+AVG+I  +++K+
Sbjct:  357 KFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQLKRKN 431          

HSP 2 Score: 69.3218 bits (168), Expect = 5.471e-36
Identity = 28/45 (62.22%), Postives = 39/45 (86.67%), Query Frame = -3
Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            S++K++PA+  + FT+QVII+NHPG+I NGY P+LDCHTSHI+ K
Sbjct:  313 SDTKNEPAKGCSKFTAQVIILNHPGEIKNGYTPLLDCHTSHISCK 357          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.473e-36
Identity = 47/72 (65.28%), Postives = 63/72 (87.50%), Query Frame = -1
Query:  232 KFSELVTKIDRRSGKELEK-EPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 444
            KF EL++KIDRR+GK +E  EP+++KNGD+ +VK++PTKP+ VE F+ +PPLGRFAVRDM+QTVAVGV+K V
Sbjct:  357 KFEELLSKIDRRTGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          

HSP 2 Score: 68.1662 bits (165), Expect = 5.473e-36
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = -3
Query:  443 SNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 577
            S++K+ PA    +FT+QVI+MNHPGQI  GY PVLDCHTSHIA K
Sbjct:  313 SDAKNQPAVGCEDFTAQVIVMNHPGQIRKGYTPVLDCHTSHIACK 357          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.672e-35
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = -1
Query:  217 KFSELVTKIDRRSGKELEKEPK---FLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKDP 444
            KF+E+V K+DRR+G  + KE      LKNGDA MV++ P++PM VE+F++YPPLGRFAVRDMRQTVAVGVIK+  KK P
Sbjct:  359 KFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAP 437          

HSP 2 Score: 67.3958 bits (163), Expect = 2.672e-35
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP +E   F +QVI++NHPGQI  GY+PVLDCHT+HIA K
Sbjct:  316 DSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACK 359          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.754e-34
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = -1
Query:  223 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 444
            +F+EL  KIDRR+GK+LE  P  LK+GDA ++ + P KP  VE F DYPPLGRFA RD++QTVAVGV+K+VE K
Sbjct:  374 QFAELQEKIDRRTGKKLEDNPGLLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVGVVKSVEHK 447          

HSP 2 Score: 66.2402 bits (160), Expect = 3.754e-34
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = -3
Query:  452 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHI 574
            NSK DP  EA++FT+QVII+NHPG I  GY+PV+DCHT+HI
Sbjct:  331 NSKSDPPTEASSFTAQVIILNHPGFIKAGYSPVIDCHTAHI 371          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.038e-30
Identity = 42/75 (56.00%), Postives = 60/75 (80.00%), Query Frame = -1
Query:  223 SKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 447
            +KF  L++K + R+GK +E+ PKFLKNG++G+V+++PTKP+ VE FS Y  LGRF +RDM++TVAVGVI+ V  K
Sbjct:  355 TKFKTLLSKNEARTGKLIEEAPKFLKNGESGIVELVPTKPLCVEEFSKYAALGRFVIRDMKRTVAVGVIQEVIHK 429          

HSP 2 Score: 60.8474 bits (146), Expect = 1.038e-30
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            ++K+DP + A +F +QVI+MNHPG I  GY PVLD HT+H+A K
Sbjct:  313 DAKNDPPKNAESFIAQVIVMNHPGHIKAGYQPVLDIHTAHVATK 356          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.582e-30
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = -1
Query:  274 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 444
            KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  357 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          

HSP 2 Score: 72.4034 bits (176), Expect = 8.582e-30
Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA K
Sbjct:  314 DSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 357          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.582e-30
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = -1
Query:  274 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 444
            KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  357 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          

HSP 2 Score: 72.4034 bits (176), Expect = 8.582e-30
Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA K
Sbjct:  314 DSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 357          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.582e-30
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = -1
Query:  274 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 444
            KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  357 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          

HSP 2 Score: 72.4034 bits (176), Expect = 8.582e-30
Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA K
Sbjct:  314 DSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 357          
The following BLAST results are available for this feature:
BLAST of CB305012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
EF1A_BOMMO6.596e-3761.33Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]
EF1A_RHYAM1.460e-3664.00Elongation factor 1-alpha (Fragment) OS=Rhynchosci... [more]
EF1A_PLAFK5.471e-3658.67Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_ENTHI5.473e-3665.28Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A_DICDI2.672e-3563.29Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A1_XENLA3.754e-3462.16Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A2_EUPCR1.038e-3056.00Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A_SPOFR8.582e-3056.14Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_HELZE8.582e-3056.14Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI8.582e-3056.14Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_G01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_G01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305012 ID=CB305012; Name=CB305012; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAACTTACCAAAAAAAAAC
TCTGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAA
ACTAAAACACGACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTAT
AGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGG
TGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCA
ACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGG
GTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAA
CCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCC
TTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTTGACGG
CAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATC
TGGCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTC
CCTGGCTGGATCATCCTTCGAGTTGGAAG
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