CB305012

Overview
NameCB305012
Unique NameCB305012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:131..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.582e-30
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = -1
Query:  274 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 444
            KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  357 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          

HSP 2 Score: 72.4034 bits (176), Expect = 8.582e-30
Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA K
Sbjct:  314 DSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 357          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.582e-30
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = -1
Query:  274 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 444
            KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  357 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          

HSP 2 Score: 72.4034 bits (176), Expect = 8.582e-30
Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA K
Sbjct:  314 DSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 357          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.582e-30
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = -1
Query:  274 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 444
            KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  357 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          

HSP 2 Score: 72.4034 bits (176), Expect = 8.582e-30
Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA K
Sbjct:  314 DSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 357          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.582e-30
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = -1
Query:  274 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 444
            KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  357 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          

HSP 2 Score: 72.4034 bits (176), Expect = 8.582e-30
Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA K
Sbjct:  314 DSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 357          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.582e-30
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = -1
Query:  274 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 444
            KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  357 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          

HSP 2 Score: 72.4034 bits (176), Expect = 8.582e-30
Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA K
Sbjct:  314 DSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 357          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.582e-30
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = -1
Query:  274 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 444
            KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  357 KFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          

HSP 2 Score: 72.4034 bits (176), Expect = 8.582e-30
Identity = 30/44 (68.18%), Postives = 39/44 (88.64%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA K
Sbjct:  314 DSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACK 357          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.117e-29
Identity = 43/70 (61.43%), Postives = 60/70 (85.71%), Query Frame = -1
Query:  235 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKN 444
            KF ++++++D+R+GK L + P  +KNG + M +++P+KPM VETFSDYPPLGRFAVRDMRQTVAVG+IK+
Sbjct:  360 KFEKIMSEMDKRTGKVLRENPDIVKNGKSMMAQLVPSKPMCVETFSDYPPLGRFAVRDMRQTVAVGIIKS 429          

HSP 2 Score: 50.8322 bits (120), Expect = 1.117e-29
Identity = 23/44 (52.27%), Postives = 32/44 (72.73%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            ++K+DP  +  +  +QVI+MNHP  I  GY PV+DCHT+HIA K
Sbjct:  318 DAKNDPPCKTES-DAQVIVMNHPSGIRPGYCPVVDCHTAHIACK 360          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.793e-27
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = -1
Query:  223 MPQCLTATPPTLPSKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 486
            +P C TA    +  KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK V+KK
Sbjct:  360 VPDCHTAH---IACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          

HSP 2 Score: 71.633 bits (174), Expect = 3.048e-12
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = -3
Query:  443 NSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVK 574
            +SK+DP  EAA FT+QVII+NHPGQI  GYAPV DCHT+HIA K
Sbjct:  328 DSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVPDCHTAHIACK 371          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.504e-24
Identity = 40/72 (55.56%), Postives = 57/72 (79.17%), Query Frame = -1
Query:  229 KFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 444
            + SELV+K+D R+G+E EK P+FLK GD  +VK  P KP+ VE ++++PPLGRFA+RDM +TV VG+I +V+
Sbjct:  357 RVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDVK 428          

HSP 2 Score: 41.5874 bits (96), Expect = 3.504e-24
Identity = 16/42 (38.10%), Postives = 28/42 (66.67%), Query Frame = -3
Query:  440 DDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKV 565
            ++P   A  FT+++I++ HP  + NGY PV+  HT+ +A +V
Sbjct:  317 NNPPTVADEFTARIIVVWHPTALANGYTPVIHVHTASVACRV 358          
BLAST of CB305012 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.505e-24
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = -1
Query:  223 FSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 441
            F+ELV K+D R+G+ LE+ P FLK GDA ++K  PTKP+ +E   ++P LGRFA+RDM QT+A G+  NV KK
Sbjct:  350 FTELVKKLDPRTGQTLEENPTFLKAGDAAIIKCHPTKPLCLENAKEFPQLGRFAIRDMGQTIAAGMCINVVKK 422          

HSP 2 Score: 44.669 bits (104), Expect = 3.505e-24
Identity = 17/41 (41.46%), Postives = 25/41 (60.98%), Query Frame = -3
Query:  449 SKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 571
            + D+P   A  FT+Q++++ HP  I  GY PV  CHT+  A
Sbjct:  307 ASDNPPAVAEEFTAQIVVLQHPSAITVGYTPVFHCHTAQTA 347          
The following BLAST results are available for this feature:
BLAST of CB305012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
EF1A_HELGL8.582e-3056.14Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI8.582e-3056.14Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM8.582e-3056.14Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL8.582e-3056.14Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_ANIIF8.582e-3056.14Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE8.582e-3056.14Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A_BLAHO1.117e-2961.43Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A1_HORSE5.793e-2770.45Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]
EF1A_SULSO3.504e-2455.56Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_METHJ3.505e-2454.79Elongation factor 1-alpha OS=Methanospirillum hung... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_G01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_G01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305012 ID=CB305012; Name=CB305012; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCAACTTACCAAAAAAAAAC
TCTGATATAAAACCAAATTCAGAGAATTAAAATGAAGTCCCGTAAAACAA
ACTAAAACACGACAAAAATAGCATAAACAGAGAAAATAAAAGCTAACTAT
AGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCTGCAGACTTGG
TGACCTTGGCACCTGTTGGATCCTTCTTTTCAACATTCTTAATCACACCA
ACAGCAACAGTCTGACGCATGTCCCTAACGGCAAAACGACCAAGAGGTGG
GTAGTCAGAGAAGGTTTCAACAACCATGGGCTTGGTGGGAATCATCTTAA
CCATTCCAGCATCTCCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCC
TTGCCTGATCGCCTATCAATCTTCGTCACGAGCTCAGAAAACTTTGACGG
CAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCATTTCCAATC
TGGCCAGGGTGGTTCATGATGATGACCTGTGAGGTGAAGTTGGCAGCTTC
CCTGGCTGGATCATCCTTCGAGTTGGAAG
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