CB305043

Overview
NameCB305043
Unique NameCB305043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13484 contig Csv1_Contig13484:310..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTB_SYNY3 (Phytoene synthase OS=Synechocystis sp. (strain PCC 6803) GN=crtB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.777e-41
Identity = 87/169 (51.48%), Postives = 119/169 (70.41%), Query Frame = -1
Query:  158 LYCYYVAGTVGLMSVPVMGI-APDSQAT--TESVY---NAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKS 646
            LYCY VAGTVGLMS  V+G+   + QA    ++VY     A+ALG+ANQLTNILRDVGED +RGR+YLP ++L +   S+ D+  G   + WR+ MK +I RAR +F+ AE G+  L+  +RWPVW +L+LY+ ILD IEAN+YN F +RAYV   KK+  LP+A+ ++
Sbjct:  166 LYCYRVAGTVGLMSSAVLGVDTGNGQAPWQPDAVYIPQEEAIALGVANQLTNILRDVGEDVERGRIYLPLEDLERFNYSEQDLLNGVNDDRWRSLMKFEIDRARHYFEDAERGIRALNRDARWPVWTALMLYKGILDVIEANNYNVFNRRAYVPTPKKLLYLPVAWLRA 334          
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTB_THET2 (Phytoene synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=crtB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.564e-21
Identity = 64/166 (38.55%), Postives = 92/166 (55.42%), Query Frame = -1
Query:  146 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRP 643
            YCY VAGTVG M  P+ G   +++A        A+ LG A QLTNILRDVGED +R RVYLP D L   G+  +D+ AG VT  +R  M +   +AR  +     G+  L +  R  +  + L YR ILD++  + Y+N  +RA++   ++   LP A+  +   P
Sbjct:  126 YCYQVAGTVGRMMAPIAGGGKEAEAR-------AVKLGQAMQLTNILRDVGEDLERDRVYLPLDLLRAHGVEVEDLRAGRVTPGYRALMAHLEGKARALYREGLAGLGHL-KVGRAAIALAALQYRGILDKLRLSGYDNLGRRAHLKAWERALLLPKAFLAARFPP 283          
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTM_STAHJ (Dehydrosqualene synthase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=crtM PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.986e-17
Identity = 57/152 (37.50%), Postives = 83/152 (54.61%), Query Frame = -1
Query:  191 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLS-DDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 643
            YCY VAGTVG++ +P++   P  +A     Y     LG A QLTNILRDVGED + GR+Y  +  L +  +S  D+I   ++++ +    +     A   +DM  N +   +E SR  +  +  +YR IL E+   DY +   RAYVSK KK
Sbjct:  127 YCYGVAGTVGVLLIPILATPPSDEA-----YEYGKQLGEALQLTNILRDVGEDYRNGRIYFSKARLNEFNVSIADEIERDQLSDNYIKIWEFYATLADNNYDMVLNHLDVYNEESRMIIELAAQVYRGILTEVRKADY-SLKDRAYVSKWKK 272          
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTB_ESCVU (Phytoene synthase OS=Escherichia vulneris GN=crtB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.798e-17
Identity = 55/158 (34.81%), Postives = 84/158 (53.16%), Query Frame = -1
Query:  170 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIA 643
            YCY+VAG VGLM   VMG+        E V + A  LG+A QLTNI RD+ +DA   R YLP + L  AGL+ ++  A E         +  I  A  ++  ++ G+ +L     W +  +  +YR+I  +++A   + + +R + SK +KIA L  A
Sbjct:  134 YCYHVAGVVGLMMARVMGVRD------ERVLDRACDLGLAFQLTNIARDIIDDAAIDRCYLPAEWLQDAGLTPENYAARENRAALARVAERLIDAAEPYYISSQAGLHDLPPRCAWAIATARSVYREIGIKVKAAGGSAWDRRQHTSKGEKIAMLMAA 285          
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTB_RHOS4 (Phytoene synthase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=crtB PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.978e-16
Identity = 58/168 (34.52%), Postives = 92/168 (54.76%), Query Frame = -1
Query:  146 YCYYVAGTVGLMSVPVMGIA-PDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRAR-MFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRP 643
            Y   VA  VG M   +M +  PD       V   A  LG+A QLTNI RDVG DA+ GR+YLP+D + + GL  ++  A  V +    ++ +++ RA    +  +E GV  L  A R  ++A+  +Y  I DEI  N Y++ T+RA+ ++ +K+  L ++  ++ L P
Sbjct:  133 YSARVAAAVGAMMCVLMRVRDPD-------VLARACDLGLAMQLTNIARDVGTDARSGRIYLPRDWMEEEGLPVEEFLARPVVDDRIRAVTHRLLRAADRLYLRSEAGVCGLPLACRPGIYAARHIYAGIGDEIARNGYDSVTRRAFTTRRQKLVWLGLSATRAALSP 293          
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTB_STRGR (Phytoene synthase OS=Streptomyces griseus GN=crtB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 60/158 (37.97%), Postives = 84/158 (53.16%), Query Frame = -1
Query:  185 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRA-----RMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIA 643
            Y +  A  +GL  +PV+G      A  E+  +AA ALG+A QLTN LRDVGED  RGR+YLP + LA  G +D D F    +    +S    + RA     R  +  A  G+  L+  SR  +  + +LY  ILD IEA+ Y    +RA V + ++ A
Sbjct:  142 YMHGSAAVIGLQMLPVLGTVV---AREEAAPHAA-ALGVAFQLTNFLRDVGEDLDRGRLYLPTELLAAHG-ADRDRFEWSRSTGMPDSRITDVLRAAAAHNRAVYRAALPGIAMLAPVSRPCIRTAFVLYSGILDAIEADGYAVLHRRAVVPRRRRAA 294          
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTB_PANAN (Phytoene synthase OS=Pantoea ananas GN=crtB PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 51/170 (30.00%), Postives = 83/170 (48.82%), Query Frame = -1
Query:  134 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPIAYAKSLLRPSRIY 643
            YCY+VAG VGLM   +MG+  ++        + A  LG+A QLTNI RD+ +DA  GR YLP   L   GL+ ++  A E         +  ++ A  ++  A  G+  L   S W +  +  +YR+I  ++E      + +R   +  +K+  L  A  ++L    R +
Sbjct:  134 YCYHVAGVVGLMMAQIMGVRDNA------TLDRACDLGLAFQLTNIARDIVDDAHAGRCYLPASWLEHEGLNKENYAAPENRQALSRIARRLVQEAEPYYLSATAGLAGLPLRSAWAIATAKQVYRKIGVKVEQAGQQAWDQRQSTTTPEKLTLLLAASGQALTSRMRAH 297          
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTB_PARSN (Phytoene synthase OS=Paracoccus sp. (strain N81106 / MBIC 01143) GN=crtB PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 58/157 (36.94%), Postives = 77/157 (49.04%), Query Frame = -1
Query:  173 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKIAALPI 643
            Y Y+VAG VG+M   VMG+  D       V + A  LG+A QLTNI RDV +DA+ GR YLP D L QAG   D         T    +   +  A +++  A  G+ +L     W + A+L +YR I   I       + +R   SKA KI  L I
Sbjct:  130 YSYHVAGIVGVMMARVMGVRDDP------VLDRACDLGLAFQLTNIARDVIDDARIGRCYLPGDWLDQAGARVDGPVPSPELYT---VILRLLDAAELYYASARVGLADLPPRCAWSIAAALRIYRAIGLRIRKGGPEAYRQRISTSKAAKIGLLGI 277          
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTB_RHOCA (Phytoene synthase OS=Rhodobacter capsulatus GN=crtB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.860e-12
Identity = 51/154 (33.12%), Postives = 77/154 (50.00%), Query Frame = -1
Query:  188 YCYYVAGTVGLMSVPVMGIA-PDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAG-EVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKKI 643
            Y   VA  VG M   +M +  PD+ A        A  LG+A Q++NI RDVGEDA+ GR++LP D + + G+      A  + T   R   +  + RA   +  A  GV  L    R  + A+  +Y  I  E+    Y+N T+RA+ +K +K+
Sbjct:  126 YSARVAAAVGAMMCVLMRVRNPDALAR-------ACDLGLAMQMSNIARDVGEDARAGRLFLPTDWMVEEGIDPQAFLADPQPTKGIRRVTERLLNRADRLYWRAATGVRLLPFDCRPGIMAAGKIYAAIGAEVAKAKYDNITRRAHTTKGRKL 272          
BLAST of CB305043 vs. ExPASy Swiss-Prot
Match: CRTM_STAAN (Dehydrosqualene synthase OS=Staphylococcus aureus (strain N315) GN=crtM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.123e-11
Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = -1
Query:  191 YCYYVAGTVGLMSVPVMGIAPDSQATTESVYNAALALGIANQLTNILRDVGEDAQRGRVYLPQDELAQAGLSDDDIFAGEVTNTWRNSMKNQIKRARMFFDMAENGVTELSEASRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKAKK 643
            YCY VAGTVG +  P++     S   T   Y+ A  LG + QL NILRDVGED    RVY  +  L Q  +   +++   V N + +  +     A   F    + +   S  ++  +  +  +Y +ILDE+   +Y    +R +V K KK
Sbjct:  129 YCYGVAGTVGEVLTPIL-----SDHETHQTYDVARRLGESLQLINILRDVGEDFDNERVYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFQDVMDQIKVFSIEAQPIIELAARIYIEILDEVRQANY-TLHERVFVDKRKK 273          
The following BLAST results are available for this feature:
BLAST of CB305043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
CRTB_SYNY31.777e-4151.48Phytoene synthase OS=Synechocystis sp. (strain PCC... [more]
CRTB_THET21.564e-2138.55Phytoene synthase OS=Thermus thermophilus (strain ... [more]
CRTM_STAHJ3.986e-1737.50Dehydrosqualene synthase OS=Staphylococcus haemoly... [more]
CRTB_ESCVU6.798e-1734.81Phytoene synthase OS=Escherichia vulneris GN=crtB ... [more]
CRTB_RHOS41.978e-1634.52Phytoene synthase OS=Rhodobacter sphaeroides (stra... [more]
CRTB_STRGR3.730e-1537.97Phytoene synthase OS=Streptomyces griseus GN=crtB ... [more]
CRTB_PANAN3.730e-1530.00Phytoene synthase OS=Pantoea ananas GN=crtB PE=3 S... [more]
CRTB_PARSN4.872e-1536.94Phytoene synthase OS=Paracoccus sp. (strain N81106... [more]
CRTB_RHOCA3.860e-1233.12Phytoene synthase OS=Rhodobacter capsulatus GN=crt... [more]
CRTM_STAAN1.123e-1131.79Dehydrosqualene synthase OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305043 ID=CB305043; Name=CB305043; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCGATATCCAAGCAATCATTTTC
ATGTTTGTTTCCACTTTGAATCCGTTTCAACTATATATGCTTCTAAACTT
TGATGTTAAATGTTCAGTTTAAGCCTTACTGGTATATATTCTTGACGGGC
GTAAGAGGGATTTTGCATATGCAATTGGTAGTGCAGCTATCTTCTTGGCT
TTACTCACATAAGCTCTCTTTGTGAAGTTGTTGTAATCATTGGCCTCAAT
CTCATCCAGTATTTGCCGGTACAACAGCAATGAAGCCCATACCGGCCATC
TACTAGCTTCACTCAGCTCGGTCACACCGTTCTCAGCCATATCAAAGAAC
ATCCTTGCCCTCTTAATTTGGTTCTTCATGGAGTTTCTCCATGTATTAGT
CACTTCTCCAGCAAATATGTCATCATCTGAAAGCCCCGCCTGTGCCAACT
CATCTTGTGGTAGATAAACCCTTCCTCTTTGGGCATCCTCTCCAACATCT
CTGAGTATGTTAGTGAGCTGATTAGCAATCCCTAGTGCCAATGCTGCATT
GTAGACGCTCTCTGTTGTTGCCTGTGAGTCAGGTGCTATGCCCATAACTG
GAACACTCATTAGCCCTACGGTCCCAGCAACATAATAACAATACAA
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