CB305090

Overview
NameCB305090
Unique NameCB305090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:872..1385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: MYL6B_HUMAN (Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = -2
Query:  325 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 507
            E FRVFDK+ NG +  AELRHV+T LGEK+T+EEV E +     D +G INYE F+K +++
Sbjct:  148 EGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEV-ETVLAGHEDSNGCINYEAFLKHILS 207          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CETN3_MOUSE (Centrin-3 OS=Mus musculus GN=Cetn3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = -2
Query:  331 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 507
            +AF++FD D +G IS   LR V   LGE ++DEE+  MI E D DGDG+IN EEF+ +M
Sbjct:  105 KAFKLFDDDDSGKISLRNLRRVARELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIM 163          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CETN3_HUMAN (Centrin-3 OS=Homo sapiens GN=CETN3 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = -2
Query:  331 EAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 507
            +AF++FD D +G IS   LR V   LGE ++DEE+  MI E D DGDG+IN EEF+ +M
Sbjct:  105 KAFKLFDDDDSGKISLRNLRRVARELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIM 163          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALML_DICDI (Calmodulin-like protein OS=Dictyostelium discoideum GN=calB PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 30/61 (49.18%), Postives = 47/61 (77.05%), Query Frame = -2
Query:  331 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 513
            +K+AF+VFDK  NG+ +  +L+H +T++GEKLT EE D M+++A    DGQI+ +EFV+V+
Sbjct:   83 IKQAFKVFDKKGNGYANIQDLKHTLTSIGEKLTKEEFDNMLKDAKT-VDGQIHVDEFVRVI 142          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: E631_DROME (Calcium-binding protein E63-1 OS=Drosophila melanogaster GN=Eip63F-1 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.885e-11
Identity = 28/59 (47.46%), Postives = 46/59 (77.97%), Query Frame = -2
Query:  328 AFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 504
            AFRVFD+D NGFI+  EL+  M  +GE L ++++++++  AD+D DG+INYEEF ++++
Sbjct:  135 AFRVFDRDGNGFITRDELQTAMEMIGEPLNEQQLEQLLVIADLDQDGRINYEEFTRLLL 193          
The following BLAST results are available for this feature:
BLAST of CB305090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
MYL6B_HUMAN7.568e-1154.10Myosin light chain 6B OS=Homo sapiens GN=MYL6B PE=... [more]
CETN3_MOUSE7.568e-1152.54Centrin-3 OS=Mus musculus GN=Cetn3 PE=2 SV=1[more]
CETN3_HUMAN7.568e-1152.54Centrin-3 OS=Homo sapiens GN=CETN3 PE=2 SV=2[more]
CALML_DICDI7.568e-1149.18Calmodulin-like protein OS=Dictyostelium discoideu... [more]
E631_DROME9.885e-1147.46Calcium-binding protein E63-1 OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_H10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_H10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305090 ID=CB305090; Name=CB305090; organism=Citrus sinensis; type=EST; length=514bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAACATCGCAAGGGTAGAAA
TTAATGAAACACATTAAACAGACAACAACATTCATAGAACAGCAGAACAA
CTAAAATAATAAAAACCGAAAAGTTTTGCGAGTCACAAGACATATTGACG
AGGGAGACAACATTCTTCCTACACCATCAGGCCCATCACCATTAAAAGAC
CATTGCTTCCTTTAGCCTGACCCTCATGACTATCAAATTAAAAATTGTAA
AAGAGAAAACTAGGAATCCCTTTATAATTTAGTCAACCCATTTTATAAGT
ATTGGGGGGTTGGGGTCATTACTTGGCCATCATAACCTTGACAAATTCCT
CATAATTTATCTGGCCATCACCATCAACATCAGCTTCCCTTATCATCTCA
TCAACTTCTTCATCAGTAAGTTTCTCTCCTAGGTTTGTCATCACATGGCG
CAGCTCAGCAGCTGAGATGAAACCATTCTGATCCTTGTCGAAAACCCGGA
AGGCCTCTTTCAGC
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