CF504216

Overview
NameCF504216
Unique NameCF504216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_LACLS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=metE PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.464e-23
Identity = 56/112 (50.00%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQ 336
            CYS F DII SI  MDADVI+ E SRS   ++   +    +   +GPGVYDIHSPRIPS++EI  ++ K+L  L    +WVNPDCGLKTR   E  P+L+++V A K +R +
Sbjct:  641 CYSEFEDIIPSIDAMDADVISFEASRSQLSIIDALKAH-HFQTLVGPGVYDIHSPRIPSSQEIKIQLEKILNKLPIEQVWVNPDCGLKTRGNKETIPSLTHLVEATKEVRKE 751          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_DESVM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=metE PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.464e-23
Identity = 54/110 (49.09%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 330
            CY +F+DII  +  +DADVI++E SRS  +LL VF     Y   +GPGVYDIHSPR+PS +E+   +     VL  + LW NPDCGLKTR + E + +L+++VAAA  +R
Sbjct:  669 CYCDFHDIIDHVAALDADVISLEASRSRMELLDVFATHA-YPNEVGPGVYDIHSPRVPSIDEMETLLRAASRVLPLDRLWANPDCGLKTRDWPETRASLAHLVAAATRVR 777          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_LACLM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metE PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.218e-23
Identity = 56/110 (50.91%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLR 330
            CYS F DII SI  MDADVI+ E SRS   ++   +    +   +GPGVYDIHSPRIPS++EI  ++ K+L  L    +WVNPDCGLKTR   E  P+L+++V A K +R
Sbjct:  641 CYSEFEDIIPSIDAMDADVISFEASRSQLSIIDALKAH-HFQTLVGPGVYDIHSPRIPSSQEIKIQLEKILNKLPIEQVWVNPDCGLKTRGNKETIPSLTHLVEATKEVR 749          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_STRSV (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus sanguinis (strain SK36) GN=metE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.203e-23
Identity = 55/113 (48.67%), Postives = 73/113 (64.60%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 339
            CYS F DII +I +MDADVI+ E SRS+ ++L   +    +   +GPGVYDIHSPR+P+  EI   I  +LA + +  +W+NPDCGLKTR   E K +L  +V AAK  R  L
Sbjct:  638 CYSEFTDIIPAIDNMDADVISFEASRSNLEILDELK-AKNFQTEVGPGVYDIHSPRVPNEGEIDHTIEAILAKVPSKKVWINPDCGLKTRGIPETKASLVRLVEAAKAARQHL 749          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_STRPN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus pneumoniae GN=metE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.203e-23
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 339
            CYS F DII +I +MDADVI+ E +RS+ ++L   +    +   +GPGVYDIHSPR+P+  EI + I  +LA + +  +W+NPDCGLKTR   E K +L  +V AAK  R +L
Sbjct:  638 CYSEFTDIIPAIDNMDADVISFEANRSNLEILDELK-AKNFQTEVGPGVYDIHSPRVPNEGEIDNTIEAILAKVPSKKVWINPDCGLKTRGIPETKESLIRLVEAAKAAREKL 749          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_STRGC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=metE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.203e-23
Identity = 55/113 (48.67%), Postives = 73/113 (64.60%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 339
            CYS F DII +I +MDADVI+ E SRS+ ++L   +    +   +GPGVYDIHSPR+P+  EI   I  +LA + +  +W+NPDCGLKTR   E K +L  +V AAK  R  L
Sbjct:  638 CYSEFTDIIPAIDNMDADVISFEASRSNLEILDELK-AKNFQTEVGPGVYDIHSPRVPNEGEIDHTIEAILAKVPSKKVWINPDCGLKTRGIPETKASLVRLVEAAKAARQHL 749          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_STRTD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=metE PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 9.362e-23
Identity = 53/113 (46.90%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQL 339
            CYS F DII +I ++DADVI+ E SRS+ ++L   +    +   +GPGVYDIHSPR+P   EI   I  +LA + ++ +W+NPDCGLKTR   E K +L+ ++ AAK  R  L
Sbjct:  638 CYSEFTDIIPAIDNLDADVISFEASRSNLEILDELK-AQNFQTEVGPGVYDIHSPRVPQDGEIDHTIEAILAKVPSSKVWINPDCGLKTRGIKETKESLTKLLEAAKAARKNL 749          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_CANAL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Candida albicans GN=MET6 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.144e-20
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQ 336
            CYS+ +   + I  +DADV++IE S+ D+   +  +E  +Y   IG G++DIHSPRIPS +E   RI ++L V   +  WVNPDCGLKTR + EVK +L+NMV AAK  R +
Sbjct:  659 CYSDLDP--NHIKALDADVVSIEFSKKDDP--NYIQEFSEYPNHIGLGLFDIHSPRIPSKQEFVSRIEEILKVYPASKFWVNPDCGLKTRGWPEVKESLTNMVEAAKEFRAK 766          
BLAST of CF504216 vs. ExPASy Swiss-Prot
Match: METE_YEAST (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Saccharomyces cerevisiae GN=MET6 PE=1 SV=4)

HSP 1 Score: 88.5817 bits (218), Expect = 1.184e-17
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    1 CYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYTEVKPALSNMVAAAKLLRTQ 336
            CYS+ +   + I  +DADV++IE S+ D+   +   E   Y   IG G++DIHSPRIPS +E   +I+ +L        WVNPDCGLKTR + E + +L++MV AAK  R Q
Sbjct:  657 CYSDLDP--NHIKALDADVVSIEFSKKDDA--NYIAEFKNYPNHIGLGLFDIHSPRIPSKDEFIAKISTILKSYPAEKFWVNPDCGLKTRGWEETRLSLTHMVEAAKYFREQ 764          
The following BLAST results are available for this feature:
BLAST of CF504216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 269
Match NameE-valueIdentityDescription
METE_LACLS2.464e-2350.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DESVM2.464e-2349.095-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_LACLM3.218e-2350.915-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRSV4.203e-2348.675-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRPN4.203e-2347.795-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRGC4.203e-2348.675-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRTD9.362e-2346.905-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CANAL1.144e-2047.325-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_YEAST1.184e-1743.755-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-705 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504216 ID=CF504216; Name=CF504216; organism=Citrus sinensis; type=EST; length=437bp
TGCTACTCCAACTTCAACGACATTATCCACTCAATTATCGACATGGATGC
TGATGTGATCACCATTGAGAACTCTCGTTCTGATGAGAAGCTCCTGTCTG
TCTTCCGTGAGGGAGTCAAGTATGGTGCTGGAATTGGCCCTGGTGTGTAT
GACATCCACTCTCCAAGAATACCATCAACTGAAGAAATTGCTGACAGAAT
CAACAAGATGCTTGCTGTGCTAGAAACCAACATTTTGTGGGTTAACCCTG
ACTGTGGTCTTAAGACTCGCAAGTACACTGAGGTGAAGCCAGCCCTCTCA
AACATGGTCGCTGCTGCCAAGCTACTCCGCACCCAGCTTGCCAGTGCCAA
GTGAGTGGTTCTGGAGATTGGAGGGATACTTCCTGAGCCATTGATTTTTT
TTTTTTTCACTTTAAACAAAGAAAGAAAATTCCTGTC
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