CF831923

Overview
NameCF831923
Unique NameCF831923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1300 contig Csv1_Contig1300:73..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.040e-27
Identity = 61/168 (36.31%), Postives = 99/168 (58.93%), Query Frame = 2
Query:  227 VLIAEKLGQAGLDLLQEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 730
            VL+++ + Q G+D+L++ A VD    LS  E+   +   DA+++RS TKV   + ++ + +LK++GRAGVG+DN+D+ AAT  G +                        R++  A+ SVK  KW+R +++G  +  KTL V+G GK+GS VA  AK +GM ++A+DP
Sbjct:   32 VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGS-QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSVKESKWERKQFIGTEVYKKTLGVVGLGKIGSHVAGVAKAMGMKLLAYDP 198          
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 4.040e-27
Identity = 71/169 (42.01%), Postives = 94/169 (55.62%), Query Frame = 2
Query:  227 VLIAEKLGQAGLDLLQEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 730
            +LI++ L      +LQ+    V    NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW R K++G  L GKTL +LG G++G EVA R +  GM  + +DP
Sbjct:    9 ILISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGYDP 176          
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: SERA_BOVIN (D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 9.000e-27
Identity = 71/169 (42.01%), Postives = 94/169 (55.62%), Query Frame = 2
Query:  227 VLIAEKLGQAGLDLLQEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 730
            VLI++ L      +LQ+    V    NLS EEL  ++  C+ LIVRS TKV  D+  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GK L +LG G++G EVA R +  GM  I +DP
Sbjct:    9 VLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTSDII-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAAASMKDGKWERKKFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDP 176          
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.460e-24
Identity = 65/170 (38.24%), Postives = 93/170 (54.71%), Query Frame = 2
Query:  221 PTVLIAEKLGQAGLDLLQEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 730
            P VLIA+KL Q+ +  L +   V         +L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +A+ADAS++A  W+R+ + G  + GKT+ V+G G++G  VA R    G HVIA+DP
Sbjct:    4 PVVLIADKLAQSTVAALGDQVEVRWVDGPDRTKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIAEADASLRAHIWKRSSFSGTEIFGKTVGVVGLGRIGQLVAARIAAFGAHVIAYDP 172          
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 5.460e-24
Identity = 64/169 (37.87%), Postives = 94/169 (55.62%), Query Frame = 2
Query:  227 VLIAEKLGQAGLDLLQEFANVDCAY-NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 730
            VL+++K+   GL  L E   ++    N++  E   ++   DAL+VRS TKV  D+F      LK+VGRAGVG+DN+D+  AT+ G +                        R++ QA+ SVK+ +W R  YVG  L GKTL ++G G++GSE+A+RA+  GM V   DP
Sbjct:    4 VLVSDKMSNDGLQPLIESDFIEIVQKNVADAE--DELHTFDALLVRSATKVTEDLFNKMTS-LKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRARAFGMTVHVFDP 169          
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.717e-22
Identity = 60/170 (35.29%), Postives = 91/170 (53.53%), Query Frame = 2
Query:  221 PTVLIAEKLGQAGLDLLQEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 730
            P VLIA+KL  + +  L +   V        ++L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +  ADAS++   W+R+ + G  + GKT+ V+G G++G  VA+R    G +V+A+DP
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP 172          
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.717e-22
Identity = 60/170 (35.29%), Postives = 91/170 (53.53%), Query Frame = 2
Query:  221 PTVLIAEKLGQAGLDLLQEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 730
            P VLIA+KL  + +  L +   V        ++L   +   DAL+VRS T V+ +V  ++A +LK+V RAGVG+DNVD+ AAT  G L                        R +  ADAS++   W+R+ + G  + GKT+ V+G G++G  VA+R    G +V+A+DP
Sbjct:    4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP 172          
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.100e-19
Identity = 53/177 (29.94%), Postives = 92/177 (51.98%), Query Frame = 2
Query:  218 KPTVLIAEKLGQAGLDLLQEFANVDC---AYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRN-------KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI 718
            KP VLI  K+ + G+ +L+E   V+     + +S E L  K+   DAL+     +++ +VF++ A RLK+V    VG DN+D+  AT+ G                          R + +AD  V++G+W++         ++G  + G+T+ ++GFG++G  +ARRAKG GM ++
Sbjct:    2 KPKVLITRKIPENGIKMLREHFEVEVWEDEHEISREVLLEKVRDVDALVTMLSERIDAEVFDA-APRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARRAKGFGMRIL 177          
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: GYAR_PYRFU (Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 52/177 (29.38%), Postives = 89/177 (50.28%), Query Frame = 2
Query:  218 KPTVLIAEKLGQAGLDLLQEFANVDC---AYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI 718
            KP V I   + + G+++L+E   V+       +  E+L  K+   DAL+     +++++VFE+ A RL++V    VG DN+D+  AT  G                          R+V + D  V++G+W+R         ++G  L GKT+ ++GFG++G  +ARRAKG  M ++
Sbjct:    2 KPKVFITRAIPENGINMLEEEFEVEVWEEEREIPREKLLEKVKDVDALVTMLSERIDQEVFEN-APRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQAIARRAKGFNMRIL 177          
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.222e-17
Identity = 53/177 (29.94%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  218 KPTVLIAEKLGQAGLDLLQEFANVDC---AYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRN-------KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI 718
            KP V I   + + G+D+L+E   V+       +  E L  K+   DAL+     +++ +VF++ A RL++V    VG DNVD+  AT  G                          R + +AD+  ++G+W+R         ++G  + GKT+ ++GFG++G  VARRAKG GM ++
Sbjct:    2 KPKVFITRAIPENGIDMLREHFEVEVWPEEREIPREVLLEKVRDVDALVTMLSERIDGEVFDN-APRLRIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARRAKGFGMRIL 177          
The following BLAST results are available for this feature:
BLAST of CF831923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SERA_SYNY34.040e-2736.31D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
SERA_RAT4.040e-2742.01D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]
SERA_BOVIN9.000e-2742.01D-3-phosphoglycerate dehydrogenase OS=Bos taurus G... [more]
SERA_MYCLE5.460e-2438.24D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_BACSU5.460e-2437.87D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
SERA_MYCTU8.717e-2235.29D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO8.717e-2235.29D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GYAR_THEON3.100e-1929.94Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
GYAR_PYRFU1.701e-1729.38Glyoxylate reductase OS=Pyrococcus furiosus GN=gya... [more]
GYAR_THEGJ2.222e-1729.94Glyoxylate reductase OS=Thermococcus gammatolerans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831923 ID=CF831923; Name=CF831923; organism=Citrus sinensis; type=EST; length=730bp
CTGCACTCCCTCTATCCATACGACGCCGCTTTAACCACCCCGAAAAATGG
CCACGTCAGCAGCCTCCTACGCTGCCTCCCTCCGTCAGCCTTCCCTCAAG
CTATCACTGTCTTCCAAACAGTCTCTTTCCCCTCTATTCTCCGTCTCCTT
CAACCGCAAGCGGGCCCCGCCGCGGCTCGTAATAATCGCATCCGCCGCCG
CTGACGGCATCTCCTCAAAACCGACCGTTTTGATCGCCGAGAAGCTCGGA
CAGGCCGGCTTGGATCTTCTTCAAGAGTTCGCCAACGTGGACTGCGCATA
CAACTTGTCGCCAGAGGAGCTCTGCACGAAGATCTCGCTGTGCGACGCGC
TGATCGTGCGCAGCGGCACGAAGGTCAATCGCGACGTGTTCGAGTCGTCA
GCTGGAAGGTTGAAGGTCGTTGGGAGAGCCGGTGTTGGTATTGATAATGT
GGATCTGGCTGCGGCTACTGAGTTTGGTTGCTTGGTTGTGAACGCGCCGA
CGGCGAATACCGTTGCGGCTGCTGAGCATGGGATCGCGCTTTTGGCTGCC
ATGGCTAGAAATGTCGCCCAGGCTGATGCCTCTGTTAAGGCTGGAAAGTG
GCAAAGGAACAAATATGTGGGTGTCTCCCTTGTGGGTAAAACACTTGCTG
TATTGGGATTCGGAAAGGTTGGATCAGAAGTTGCTCGTCGTGCCAAGGGT
CTGGGTATGCATGTCATTGCACATGATCCG
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