CF831923

Overview
NameCF831923
Unique NameCF831923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1300 contig Csv1_Contig1300:73..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: GYAR_THELI (Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 50/177 (28.25%), Postives = 93/177 (52.54%), Query Frame = 2
Query:  218 KPTVLIAEKLGQAGLDLLQEFANVDCAYNLSPEE---LCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI 718
            KP V I  ++ + G+ ++++F  ++   +        L  K+   DAL+     KV++++ E+ A +LK++ +  VG DN+D+  AT+ G                          R + +ADA V++G+W++++       ++G  L GKTL ++GFG++G  +A+RAKG GM +I
Sbjct:    2 KPKVFITRQIPENGIKMIEKFYEIELWKDPKAPPRGVLLEKVREVDALVTLVTDKVDKELLEN-APKLKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKII 177          
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: GYAR_KORCO (Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.103e-16
Identity = 51/177 (28.81%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  218 KPTVLIAEKLGQAGLDLLQEFANVDCAYNLSPEE---LCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKY----VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHD 727
            KP V +  ++ + GL  ++E   +D   + +P     +  ++  CDAL+      ++ +VFE+ A +L++V +  VG DN+D+  AT+ G                          R V +AD  V+ GKW+   +    +G  + G+TL ++G G++G+ VARRAKG GM ++ +D
Sbjct:    2 KPRVFVTREIPERGLSKIEEHFELDLWKDEAPPSKKVIIERVKDCDALVSLLTDPIDAEVFEA-APKLRIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVARRAKGFGMRILYYD 177          
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: GYAR_PYRKO (Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 49/177 (27.68%), Postives = 87/177 (49.15%), Query Frame = 2
Query:  218 KPTVLIAEKLGQAGLDLLQEFANVDC---AYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI 718
            +P V I   + + G+++L+E   V+       +  E L  K+   DAL+     +++ +VF++ A RL++V    VG DN+D+  AT  G                          R + +AD   ++G+W+R         ++G  + GKT+ ++GFG++G  VARRA+G GM ++
Sbjct:    2 RPKVFITRAIPENGIEMLKEHFEVEVWPEEREIPREVLLKKVRDVDALVTMLSERIDSEVFDA-APRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARRARGFGMRIL 177          
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: GYAR_PYRHO (Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.080e-15
Identity = 46/177 (25.99%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  218 KPTVLIAEKLGQAGLDLLQEFANVDC---AYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI 718
            KP V I  ++ + G+ +L++   V+       +  E L  K+   DAL+     +++++VFE+ A +L++V    VG DN+D+  AT+ G                          R+V + D  V++G+W++         ++G  + GKT+ ++G G++G  +A+RAKG  M ++
Sbjct:    2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFEN-APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRIL 177          
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: GYAR_PYRAB (Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-15
Identity = 46/177 (25.99%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  218 KPTVLIAEKLGQAGLDLLQEFANVDC---AYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI 718
            KP V I  ++ + G+++L++   V+       +  E L  K+   DAL+     +++R+VFE  A RL++V    VG DN+D+  AT+ G                          R++ + D   ++G+W++         ++G  + GKT+ ++GFG++G  +A+RA+G  M ++
Sbjct:    3 KPRVFITREIPEVGIEMLEKEFEVEVWEDEREIPREILLEKVKDVDALVTMLSERIDREVFER-APRLRIVANYAVGYDNIDVEEATKRGIYVTNTPGVLTDATADLAFALLLATARHLVKGDKFTRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGFGRIGQAIAKRARGFDMRIL 178          
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: GYAR_AERPE (Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 54/179 (30.17%), Postives = 82/179 (45.81%), Query Frame = 2
Query:  218 KPTVLIAEKLGQAGLDLLQEFANVDCAYNLSP---EELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 724
            +P V +  ++    L+LL ++ +V+      P   E L +K    DAL      +++ D+  S A RL++V +  VG DN+D+  AT  G                          R V +AD  V+ G+W R +        +GV L GKTL +LG G++GS VA   K  GM +I H
Sbjct:    3 RPRVFVTREVFPEALELLSKYYDVEVWDKYQPPPYETLLSKAREADALYTLLTDRIDCDLL-SQAPRLRIVAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIGKAFGMRIIYH 180          
BLAST of CF831923 vs. ExPASy Swiss-Prot
Match: TKRA_BACSU (Probable 2-ketogluconate reductase OS=Bacillus subtilis GN=yvcT PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 53/182 (29.12%), Postives = 82/182 (45.05%), Query Frame = 2
Query:  218 KPTVLIAEKLGQAGLDLLQEFANVDCAYNLSPEE------LCTKISLCDALIVR--SGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKW---QRNKYVGVSLVGKTLAVLGFGKVGSEVARRAK-GLGMHVIAHD 727
            KP V I + + +     ++ F    C Y +  E+      L  K+   + L+    SG  +NR++ E  A +LKVV    VG DN D+ A  E G +                        R VA+ D  V+AGKW   +     G+ +  +TL ++G G++G + ARRAK G  M V+ H+
Sbjct:    3 KPFVFITKPIPEE----IEAFIGEHCRYEVWQEDTLPSDVLFEKLKEAEGLLTSGTSGPSINRELLEH-APKLKVVSNQSVGYDNFDIEAMKERGVVGTHTPYTLDDTVADLAFSLILSSARRVAELDRFVRAGKWGTVEEEALFGIDVHHQTLGIIGMGRIGEQAARRAKFGFDMEVLYHN 179          
The following BLAST results are available for this feature:
BLAST of CF831923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GYAR_THELI3.790e-1728.25Glyoxylate reductase OS=Thermococcus litoralis GN=... [more]
GYAR_KORCO1.103e-1628.81Glyoxylate reductase OS=Korarchaeum cryptofilum (s... [more]
GYAR_PYRKO7.148e-1627.68Glyoxylate reductase OS=Pyrococcus kodakaraensis G... [more]
GYAR_PYRHO2.080e-1525.99Glyoxylate reductase OS=Pyrococcus horikoshii GN=g... [more]
GYAR_PYRAB2.716e-1525.99Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR ... [more]
GYAR_AERPE1.032e-1430.17Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR P... [more]
TKRA_BACSU4.794e-1229.12Probable 2-ketogluconate reductase OS=Bacillus sub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831923 ID=CF831923; Name=CF831923; organism=Citrus sinensis; type=EST; length=730bp
CTGCACTCCCTCTATCCATACGACGCCGCTTTAACCACCCCGAAAAATGG
CCACGTCAGCAGCCTCCTACGCTGCCTCCCTCCGTCAGCCTTCCCTCAAG
CTATCACTGTCTTCCAAACAGTCTCTTTCCCCTCTATTCTCCGTCTCCTT
CAACCGCAAGCGGGCCCCGCCGCGGCTCGTAATAATCGCATCCGCCGCCG
CTGACGGCATCTCCTCAAAACCGACCGTTTTGATCGCCGAGAAGCTCGGA
CAGGCCGGCTTGGATCTTCTTCAAGAGTTCGCCAACGTGGACTGCGCATA
CAACTTGTCGCCAGAGGAGCTCTGCACGAAGATCTCGCTGTGCGACGCGC
TGATCGTGCGCAGCGGCACGAAGGTCAATCGCGACGTGTTCGAGTCGTCA
GCTGGAAGGTTGAAGGTCGTTGGGAGAGCCGGTGTTGGTATTGATAATGT
GGATCTGGCTGCGGCTACTGAGTTTGGTTGCTTGGTTGTGAACGCGCCGA
CGGCGAATACCGTTGCGGCTGCTGAGCATGGGATCGCGCTTTTGGCTGCC
ATGGCTAGAAATGTCGCCCAGGCTGATGCCTCTGTTAAGGCTGGAAAGTG
GCAAAGGAACAAATATGTGGGTGTCTCCCTTGTGGGTAAAACACTTGCTG
TATTGGGATTCGGAAAGGTTGGATCAGAAGTTGCTCGTCGTGCCAAGGGT
CTGGGTATGCATGTCATTGCACATGATCCG
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