CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CYAP7 (ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 7424) GN=atpG PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.646e-28
Identity = 63/112 (56.25%), Postives = 82/112 (73.21%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRL    GK  V R+ V+ +       M+FEQDP QILD+++PLY+N+Q+LRA QES ASE+AARM+ MS  +DNA EL K LS++YN+ RQ  IT E+LE+VAGA AL
Sbjct:  203 DEIFRLVTKGGKFQVEREKVSASVSSFPQDMIFEQDPVQILDSLLPLYLNNQLLRALQESAASELAARMTAMSSASDNAGELIKTLSLSYNKARQAAITQEILEVVAGANAL 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CYAP4 (ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=atpG PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.475e-27
Identity = 63/112 (56.25%), Postives = 82/112 (73.21%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRLT   G+  V R+ V+     +   M+FEQDP QILDA++PLY+N+Q+LRA QES ASE+AARM+ M+  +DNA EL K LS+ YN+ RQ  IT E+LE+V GAEAL
Sbjct:  203 DEIFRLTTRGGRFEVQREKVSSATQSMPQDMIFEQDPLQILDALLPLYLNNQLLRALQESAASELAARMTAMNNASDNAKELIKGLSMTYNKARQAAITQEILEVVGGAEAL 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SYNP1 (ATP synthase gamma chain OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.291e-27
Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRLT     + V R+ VT N   L P M+FEQDP QILDA++PLY+++Q+LRA QE+ ASE+AARM+ M+  +DNA  L   L+++YN+ RQ  IT E+LE+VAGAEAL
Sbjct:  203 DEIFRLTTRASHLEVNREKVTSNLPALPPDMIFEQDPVQILDALLPLYLSNQLLRALQEAAASELAARMTAMNNASDNAQTLIGTLTLSYNKARQAAITQEILEVVAGAEAL 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CYAA5 (ATP synthase gamma chain OS=Cyanothece sp. (strain ATCC 51142) GN=atpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.291e-27
Identity = 61/112 (54.46%), Postives = 83/112 (74.11%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRL   EGK+ V R++VT         M+FEQDP QILDA++PLY+N+Q+LRA QE+ ASE+AARM+ MS  +DNA +L   L+++YN+ RQ  IT +L+E+VAGA AL
Sbjct:  203 DEIFRLITREGKLQVERETVTQTMSSFPQDMIFEQDPVQILDALLPLYINNQLLRALQEAAASELAARMTAMSNASDNAGQLIGTLTLSYNKARQAAITQQLMEVVAGANAL 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SYNJA (ATP synthase gamma chain OS=Synechococcus sp. (strain JA-3-3Ab) GN=atpG PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.130e-26
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+F L    G+  V R  +        P M+FEQDP QILDA++PLY+N+Q+LRA QE+ ASE+AARM+ MS  +DNA EL + L +AYN+ RQ  IT E+LE+VAGAEAL
Sbjct:  203 DEIFNLLVRGGEFTVERSKIVAAVSAPPPDMIFEQDPVQILDALLPLYLNNQLLRALQEAAASELAARMTAMSNASDNATELIRTLGLAYNKARQAAITQEILEVVAGAEAL 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SYNP6 (ATP synthase gamma chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.781e-26
Identity = 61/112 (54.46%), Postives = 81/112 (72.32%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRLT   G   V R+ +T     L   M+FEQDPAQIL A++PLY+++Q+LRA QE+ ASE+AARM+ M+  +DNA+ L   L++ YN+ RQ  IT ELLE+VAGAEAL
Sbjct:  203 DEIFRLTTRGGSFTVEREKLTSEVAPLPRDMIFEQDPAQILSALLPLYLSNQLLRALQEAAASELAARMTAMNSASDNANALVGQLTLVYNKARQAAITQELLEVVAGAEAL 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SYNE7 (ATP synthase gamma chain OS=Synechococcus elongatus (strain PCC 7942) GN=atpG PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.781e-26
Identity = 61/112 (54.46%), Postives = 81/112 (72.32%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRLT   G   V R+ +T     L   M+FEQDPAQIL A++PLY+++Q+LRA QE+ ASE+AARM+ M+  +DNA+ L   L++ YN+ RQ  IT ELLE+VAGAEAL
Sbjct:  203 DEIFRLTTRGGSFTVEREKLTSEVAPLPRDMIFEQDPAQILSALLPLYLSNQLLRALQEAAASELAARMTAMNSASDNANALVGQLTLVYNKARQAAITQELLEVVAGAEAL 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SPIPL (ATP synthase gamma chain OS=Spirulina platensis GN=atpG PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 4.744e-26
Identity = 59/109 (54.13%), Postives = 82/109 (75.23%), Query Frame = -1
Query:  243 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGA 569
            DE+FRLT   GK  V R+ V+     L+  M+FEQDP +IL+A++PL++ +Q+LRA+QES ASE+AARM+ MS  +DNA +L K L+++YN+ RQ  IT ELLE+VAGA
Sbjct:  203 DEVFRLTSKGGKFDVTREKVSVEPEALAQDMIFEQDPVEILNALLPLFLTNQLLRAWQESTASELAARMTAMSNASDNASDLVKTLTLSYNKARQASITQELLEVVAGA 311          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MICAN (ATP synthase gamma chain OS=Microcystis aeruginosa (strain NIES-843) GN=atpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.196e-26
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRL   EGK  V R+ +     ++ P  M+FEQ+P QILD+++PLY+N+Q+LRA QES ASE+AARM+ MS  ++NA EL   LS  YN+ RQ  IT ELLE+VAGA AL
Sbjct:  203 DEIFRLVTKEGKFKVQREKMASQPAQVFPQDMIFEQNPVQILDSLLPLYLNNQLLRALQESAASELAARMTAMSNASENASELIGTLSRTYNKARQAAITQELLEVVAGANAL 315          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_THEEB (ATP synthase gamma chain OS=Thermosynechococcus elongatus (strain BP-1) GN=atpG PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.093e-26
Identity = 61/112 (54.46%), Postives = 81/112 (72.32%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRLT     + V R+ VT     L   M+FEQDP QILDA++PLY+N+Q+LRA QE+ ASE+AARM+ M+  +DNA  L   L+++YN+ RQ  IT E+LE+VAGAEAL
Sbjct:  203 DEIFRLTTRGSHLEVNREKVTSTLPALPSDMIFEQDPLQILDALLPLYLNNQLLRALQEAAASELAARMTAMNNASDNAQALIGTLTLSYNKARQAAITQEILEVVAGAEAL 314          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_CYAP78.646e-2856.25ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_CYAP41.475e-2756.25ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_SYNP14.291e-2755.36ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_CYAA54.291e-2754.46ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_SYNJA2.130e-2654.46ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SYNP62.781e-2654.46ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SYNE72.781e-2654.46ATP synthase gamma chain OS=Synechococcus elongatu... [more]
ATPG_SPIPL4.744e-2654.13ATP synthase gamma chain OS=Spirulina platensis GN... [more]
ATPG_MICAN6.196e-2654.87ATP synthase gamma chain OS=Microcystis aeruginosa... [more]
ATPG_THEEB8.093e-2654.46ATP synthase gamma chain OS=Thermosynechococcus el... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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