CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ODOSI (ATP synthase gamma chain, chloroplastic OS=Odontella sinensis GN=ATPC PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.375e-23
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+F+LT + G   V R  +   + +  P  M+FEQDP QI+++++PLY+N QILR  QES ASE+AARM  M   +DNA +L K LS  YN+ RQ  +T E+LEIV+GA AL
Sbjct:  257 DEVFQLTSSGGDFEVERTELEVAEPQDFPNDMIFEQDPIQIINSILPLYLNGQILRTLQESVASELAARMQSMQSASDNAGDLAKRLSTEYNRARQAAVTQEILEIVSGASAL 369          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROM4 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9211) GN=atpG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.094e-22
Identity = 52/112 (46.43%), Postives = 80/112 (71.43%), Query Frame = -1
Query:  237 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEA 569
            DE+FRLT    +++V +D+   N+    P  ++FEQ P Q+L+A++PLY+ +Q+LRA QES ASE+A+RM+ M+  +DNA EL K L++ YN+ RQ  IT E+LE+V G+ +
Sbjct:  205 DEMFRLTTKNSRLVVEKDAAPSNEQPKLPSDVVFEQSPDQLLNALLPLYLQNQLLRALQESAASELASRMTAMNNASDNAKELAKTLNLTYNKARQAAITQEILEVVGGSSS 316          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROMP (ATP synthase gamma chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=atpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.866e-22
Identity = 52/110 (47.27%), Postives = 77/110 (70.00%), Query Frame = -1
Query:  243 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGA 569
            DE+FRLT    K++V + ++  N  +  P  ++FEQ P Q+LD+++PLY+ +QILRA QES ASE+A RM+ M+  +DNA EL   L++ YN+ RQ  IT E+LE+V G+
Sbjct:  205 DEIFRLTTKNSKLLVEKSNIEKNDSDKLPSDIVFEQSPDQLLDSLLPLYLQNQILRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROM5 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9515) GN=atpG PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.866e-22
Identity = 52/110 (47.27%), Postives = 78/110 (70.91%), Query Frame = -1
Query:  243 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGA 569
            DE+FRLT    K++V + ++  N+ +  P  ++FEQ P Q+LD+++PLY+ +QILRA QES ASE+A RM+ M+  +DNA EL   L++ YN+ RQ  IT E+LE+V G+
Sbjct:  205 DEIFRLTTKNSKLLVEKSNLEKNESDRLPSDIVFEQSPDQLLDSLLPLYLQNQILRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROMS (ATP synthase gamma chain OS=Prochlorococcus marinus (strain AS9601) GN=atpG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.437e-22
Identity = 51/110 (46.36%), Postives = 78/110 (70.91%), Query Frame = -1
Query:  243 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGA 569
            DE+FRLT  + K++V + ++  +  E  P  ++FEQ P Q+LD+++PLY+ +Q+LRA QES ASE+A RM+ M+  +DNA EL   L++ YN+ RQ  IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSKLLVEKSNIEKSDSEKLPSDIVFEQSPDQLLDSLLPLYLQNQVLRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROM9 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9312) GN=atpG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.437e-22
Identity = 51/110 (46.36%), Postives = 78/110 (70.91%), Query Frame = -1
Query:  243 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGA 569
            DE+FRLT  + K++V + ++  +  E  P  ++FEQ P Q+LD+++PLY+ +Q+LRA QES ASE+A RM+ M+  +DNA EL   L++ YN+ RQ  IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSKLLVEKSNIEKSDSEKLPSDIVFEQSPDQLLDSLLPLYLQNQVLRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROM2 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9215) GN=atpG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.437e-22
Identity = 51/110 (46.36%), Postives = 78/110 (70.91%), Query Frame = -1
Query:  243 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGA 569
            DE+FRLT  + K++V + ++  +  E  P  ++FEQ P Q+LD+++PLY+ +Q+LRA QES ASE+A RM+ M+  +DNA EL   L++ YN+ RQ  IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSKLLVEKSNIEKSDSEKLPSDIVFEQSPDQLLDSLLPLYLQNQVLRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROM0 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9301) GN=atpG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.437e-22
Identity = 51/110 (46.36%), Postives = 78/110 (70.91%), Query Frame = -1
Query:  243 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGA 569
            DE+FRLT  + K++V + ++  +  E  P  ++FEQ P Q+LD+++PLY+ +Q+LRA QES ASE+A RM+ M+  +DNA EL   L++ YN+ RQ  IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSKLLVEKSNIEKSDSEKLPSDIVFEQSPDQLLDSLLPLYLQNQVLRALQESAASELACRMTAMNNASDNAKELASTLNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SYNS3 (ATP synthase gamma chain OS=Synechococcus sp. (strain CC9311) GN=atpG PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.156e-22
Identity = 54/112 (48.21%), Postives = 78/112 (69.64%), Query Frame = -1
Query:  237 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEA 569
            DE+FRLT  EG++ V   S   N     P  ++FEQ P Q+L+A++PLY+ +Q+LR+ QES ASE+A+RM+ M+  +DNA EL K L++ YN+ RQ  IT E+LE+V G+ A
Sbjct:  203 DEIFRLTTKEGRLSVEAGSAPENSQPALPSDIVFEQSPDQLLNALLPLYLQNQLLRSLQESAASELASRMTAMNNASDNAKELAKTLTLDYNKARQAAITQEILEVVGGSAA 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SYNPW (ATP synthase gamma chain OS=Synechococcus sp. (strain WH7803) GN=atpG PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.579e-21
Identity = 53/113 (46.90%), Postives = 79/113 (69.91%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFN-KGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRLT  +G + V   S   N + ELS  ++FEQ P Q+L+A++PLY+ +Q+LR+ QE+ ASE+A+RM+ M+  +DNA  L K L++ YN+ RQ  IT E+LE+  GA A+
Sbjct:  203 DEIFRLTTKDGDLRVETGSAPANAQPELSSEIVFEQSPDQLLNALLPLYLQNQVLRSLQEAAASELASRMTAMNNASDNAKALAKTLTLDYNKARQAAITQEILEVAGGAAAV 315          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_ODOSI8.375e-2350.44ATP synthase gamma chain, chloroplastic OS=Odontel... [more]
ATPG_PROM41.094e-2246.43ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROMP1.866e-2247.27ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM51.866e-2247.27ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROMS2.437e-2246.36ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM92.437e-2246.36ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM22.437e-2246.36ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM02.437e-2246.36ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_SYNS34.156e-2248.21ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SYNPW1.579e-2146.90ATP synthase gamma chain OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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