CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROMA (ATP synthase gamma chain OS=Prochlorococcus marinus GN=atpG PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.579e-21
Identity = 49/110 (44.55%), Postives = 78/110 (70.91%), Query Frame = -1
Query:  243 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGA 569
            DE+FR+T    + ++ +D    N+  + P  ++FEQ P Q+L++++PLY+ +Q+LRA QE+ ASE+A+RM+ M+  +DNA EL K L++ YN+ RQ  IT E+LE+V GA
Sbjct:  205 DEIFRITTKGSRFVIEKDPAPANEEPVLPSDVVFEQSPDQLLNSLLPLYLQNQLLRALQEAAASELASRMTAMNNASDNAKELAKTLNLTYNKARQAAITQEILEVVGGA 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_GLOVI (ATP synthase gamma chain OS=Gloeobacter violaceus GN=atpG PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.694e-21
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = -1
Query:  237 DELFRLTPNEGKMIVARDSVTFN-KGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEA 569
            DE F+L    G   V R+      + E +   +FEQDP Q+LDA++PLY+ S++L A QES ASE+AARM+ MS  +DNA +L   L++ YN+ RQ  IT E+LE+V+GA A
Sbjct:  203 DETFKLITKGGGFEVLREKQQVRTEPEFAADTIFEQDPTQLLDALLPLYLTSEVLHALQESSASELAARMTAMSAASDNAKKLLSTLTIVYNKARQASITQEILEVVSGANA 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SYNS9 (ATP synthase gamma chain OS=Synechococcus sp. (strain CC9902) GN=atpG PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.002e-21
Identity = 51/112 (45.54%), Postives = 78/112 (69.64%), Query Frame = -1
Query:  237 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEA 569
            DE+F LT ++G++ V   + + N     P  ++FEQ P Q+L+A++PLY+ +Q+LR  QES ASE+A+RM+ M+  +DNA EL K L++ YN+ RQ  IT E+LE+V G+ A
Sbjct:  203 DEIFNLTTDQGRLTVEPGTSSANTAPKIPSDIVFEQSPDQLLNALLPLYLQNQLLRCLQESAASELASRMTAMNNASDNAKELAKTLTLDYNKARQAAITQEILEVVGGSAA 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SYNPX (ATP synthase gamma chain OS=Synechococcus sp. (strain WH8102) GN=atpG PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.002e-21
Identity = 52/113 (46.02%), Postives = 78/113 (69.03%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRLT  +G++ V   +   N     P  ++FEQ P Q+L+A++PLY+ +Q+LR+ QES ASE+A+RM+ M+  +DNA EL K L++ YN+ RQ  IT E+LE+  GA A+
Sbjct:  203 DEIFRLTTKDGRLTVEPGAGPANTEPKIPSDIVFEQTPEQLLNALLPLYLQNQLLRSLQESAASELASRMTAMNNASDNAKELAKTLTLDYNKARQAAITQEILEVAGGAAAV 315          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SYNSC (ATP synthase gamma chain OS=Synechococcus sp. (strain CC9605) GN=atpG PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.746e-20
Identity = 52/113 (46.02%), Postives = 77/113 (68.14%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRLT  +G + V   +   N     P  ++FEQ P Q+L+A++PLY+ +Q+LR+ QES ASE+A+RM+ M+  +DNA EL K L++ YN+ RQ  IT E+LE+  GA A+
Sbjct:  203 DEIFRLTTKDGLLTVEPGAGPANTEPKIPSDIVFEQTPEQLLNALLPLYLQNQLLRSLQESAASELASRMTAMNNASDNAKELAKTLTLDYNKARQAAITQEILEVAGGAAAV 315          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROMM (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9313) GN=atpG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.636e-20
Identity = 50/110 (45.45%), Postives = 76/110 (69.09%), Query Frame = -1
Query:  243 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGA 569
            DE+FRLT  + ++ V +     N+    P  ++FEQ P Q+L+A++PLY+ +Q+LRA QES ASE+A+RM+ M+  +DNA  L K L++ YN+ RQ  IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSRLTVEKGVGPANEQPPLPSDIIFEQSPEQLLNALLPLYLQNQMLRALQESAASELASRMTAMNNASDNAKALAKTLTLDYNKARQAAITQEILEVVGGS 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROM3 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9303) GN=atpG PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.636e-20
Identity = 50/110 (45.45%), Postives = 76/110 (69.09%), Query Frame = -1
Query:  243 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGA 569
            DE+FRLT  + ++ V +     N+    P  ++FEQ P Q+L+A++PLY+ +Q+LRA QES ASE+A+RM+ M+  +DNA  L K L++ YN+ RQ  IT E+LE+V G+
Sbjct:  205 DEIFRLTTKDSRLTVEKGVGPANEQPPLPSDIIFEQSPEQLLNALLPLYLQNQMLRALQESAASELASRMTAMNNASDNAKALAKTLTLDYNKARQAAITQEILEVVGGS 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_VIGUN (ATP synthase subunit gamma, chloroplastic (Fragment) OS=Vigna unguiculata PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.478e-19
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = -1
Query:  351 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMS 569
            DE FRLT  EGK+ V RD V     + SP++ FEQDP QILDA++PLY+NSQILRA QES ASE+AARMS MS
Sbjct:   42 DEFFRLTTKEGKLTVERDVVRTKTTDYSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMS 114          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PELPB (ATP synthase gamma chain OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.408e-16
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = -1
Query:  231 LTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALT 554
            L PN  + ++   +      E S   ++E  P+ I+D ++P ++N+QI R   ES A+E AARMS M   T+NA EL + L+++YN+ RQ  IT EL EIV+GA+ALT
Sbjct:  183 LAPNLREEVILPIAPEIPGTESSSDYIYEPSPSAIIDELVPKHLNTQIWRMMLESSAAEQAARMSAMDSATENAKELMRTLNISYNRARQAAITTELSEIVSGADALT 290          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROA2 (ATP synthase gamma chain OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=atpG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.209e-15
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E  PA I+D ++P ++N+Q+ R   ES A+E AARM+ M   T+NA EL + L+++YN+ RQ  IT EL EIVAGAEAL
Sbjct:  209 IYEPSPASIIDVLVPKHLNTQVWRMMLESNAAEQAARMAAMDSATENAKELLRLLNISYNRARQAAITTELSEIVAGAEAL 289          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_PROMA1.579e-2144.55ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_GLOVI2.694e-2147.32ATP synthase gamma chain OS=Gloeobacter violaceus ... [more]
ATPG_SYNS96.002e-2145.54ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SYNPX6.002e-2146.02ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SYNSC1.746e-2046.02ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_PROMM6.636e-2045.45ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM36.636e-2045.45ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_VIGUN1.478e-1965.75ATP synthase subunit gamma, chloroplastic (Fragmen... [more]
ATPG_PELPB3.408e-1642.59ATP synthase gamma chain OS=Pelodictyon phaeoclath... [more]
ATPG_PROA22.209e-1550.62ATP synthase gamma chain OS=Prosthecochloris aestu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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