CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BRUAB (ATP synthase gamma chain OS=Brucella abortus GN=atpG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  234 NEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 545
            NE +M  A D++            +E DPA IL  ++P  ++ QI RA  E+ A E+ A+MS M   T NA ++   LS+ YN++RQ +IT EL+EI++GAEAL
Sbjct:  199 NEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BRUA2 (ATP synthase gamma chain OS=Brucella abortus (strain 2308) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  234 NEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 545
            NE +M  A D++            +E DPA IL  ++P  ++ QI RA  E+ A E+ A+MS M   T NA ++   LS+ YN++RQ +IT EL+EI++GAEAL
Sbjct:  199 NEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BRUA1 (ATP synthase gamma chain OS=Brucella abortus (strain S19) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  234 NEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 545
            NE +M  A D++            +E DPA IL  ++P  ++ QI RA  E+ A E+ A+MS M   T NA ++   LS+ YN++RQ +IT EL+EI++GAEAL
Sbjct:  199 NEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_STRGG (ATP synthase gamma chain OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.441e-14
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = -1
Query:  234 VARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 527
            VA +S    KGE+ PL  FE     +LDA++P Y+ S+I  A  ++ ASE AAR   M   TDNA +L K+LS   N  RQ +IT E+ EIV GA AL
Sbjct:  201 VAEEST--RKGEILPLFDFEPSAEDVLDALLPRYVESRIYNALLQAAASEHAARRRAMKSATDNAGDLIKSLSRLANAARQAEITQEISEIVGGASAL 296          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_RHILW (ATP synthase gamma chain OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.441e-14
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E DPA IL+ ++P  ++ QI RA  E+ A E+ A+MS M   T NA E+   L+++YN++RQ +IT EL+EI++GAEAL
Sbjct:  215 YEPDPASILEDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 294          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_OCHA4 (ATP synthase gamma chain OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.441e-14
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E DPA IL  ++P  ++ QI RA  E+ A E+ A+MS M   T NA ++   LS+ YN++RQ +IT EL+EI++GAEAL
Sbjct:  213 YEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BARHE (ATP synthase gamma chain OS=Bartonella henselae GN=atpG PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.441e-14
Identity = 40/91 (43.96%), Postives = 61/91 (67.03%), Query Frame = -1
Query:  234 NKGELSPLML-FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 503
            N  +L  ++  +E D A +LD ++P  ++ QI RA  E+ A E+ A+M+ M   + NA E+   L+VAYN++RQ +IT EL+EI+AGAEAL
Sbjct:  213 NSADLQSIVYDYEPDAASLLDVLVPRNLSVQIFRALLENVAGEMGAKMTAMDNASRNAGEMINKLTVAYNRQRQAQITTELIEIIAGAEAL 303          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_HYPNA (ATP synthase gamma chain OS=Hyphomonas neptunium (strain ATCC 15444) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.106e-14
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E     +L+A++P Y+N+QIL A  ES A E A+RM+ M   T NA +L K L++ YN+ RQ +IT EL+EI++GAEAL
Sbjct:  212 IYEPSEEALLEALLPRYINTQILSAMLESSAGEQASRMTAMDNATRNAKDLIKALNLKYNRARQAQITKELIEIISGAEAL 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CORJK (ATP synthase gamma chain OS=Corynebacterium jeikeium (strain K411) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.106e-14
Identity = 50/116 (43.10%), Postives = 63/116 (54.31%), Query Frame = -1
Query:  234 ELFRLTP-----NEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 566
            E  RL P      E K  +  D V+     ++    FE DP  +L A++P Y++  I  A  ES ASE AAR + MS  TDNA +L K LS   NQ RQ +IT E+ EIV GA AL
Sbjct:  204 EAHRLLPIETVVEEEKFELGEDLVSDKVDHIAADYDFEPDPDTLLKALLPQYVSRGIFAAMLESAASESAARRTAMSAATDNATDLVKQLSRVANQARQAQITQEITEIVGGASAL 319          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BART1 (ATP synthase gamma chain OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.106e-14
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E D A +L+A++P  ++ QI RA  E+ A E+ A+M+ M   + NA E+   L+VAYN++RQ +IT EL+EI+AGAEAL
Sbjct:  229 YEPDAASLLEALVPRNLSVQIFRALLENVAGEMGAKMTAMDNASRNAGEMINKLTVAYNRQRQAQITTELIEIIAGAEAL 308          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_BRUAB4.166e-1441.35ATP synthase gamma chain OS=Brucella abortus GN=at... [more]
ATPG_BRUA24.166e-1441.35ATP synthase gamma chain OS=Brucella abortus (stra... [more]
ATPG_BRUA14.166e-1441.35ATP synthase gamma chain OS=Brucella abortus (stra... [more]
ATPG_STRGG5.441e-1446.94ATP synthase gamma chain OS=Streptomyces griseus s... [more]
ATPG_RHILW5.441e-1447.50ATP synthase gamma chain OS=Rhizobium leguminosaru... [more]
ATPG_OCHA45.441e-1447.50ATP synthase gamma chain OS=Ochrobactrum anthropi ... [more]
ATPG_BARHE5.441e-1443.96ATP synthase gamma chain OS=Bartonella henselae GN... [more]
ATPG_HYPNA7.106e-1448.15ATP synthase gamma chain OS=Hyphomonas neptunium (... [more]
ATPG_CORJK7.106e-1443.10ATP synthase gamma chain OS=Corynebacterium jeikei... [more]
ATPG_BART17.106e-1447.50ATP synthase gamma chain OS=Bartonella tribocorum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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