CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MYCVP (ATP synthase gamma chain OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.281e-14
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  234 LMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 482
            L  FE DP  + DA++P Y+ +++  A  E+ ASE A+R   M   TDNAD+L K L++A N+ERQ +IT E+ EIV GA AL
Sbjct:  223 LFSFEPDPETLFDALLPRYVATRVYAALLEAAASESASRRRAMKSATDNADDLIKALTLAANRERQAQITQEISEIVGGANAL 305          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CORU7 (ATP synthase gamma chain OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=atpG PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.281e-14
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = -1
Query:  234 EGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 542
            E KM +  D V+ +  ++S  + FE D   +L  ++P Y++  I  A  E+ ASE AAR + MS  TDNA EL +NLS   NQ RQ +IT E+ EIV GA AL
Sbjct:  216 EEKMELGSDMVSDSADQVSAEVDFEPDADTLLANLLPQYVSRGIFAALLEAAASESAARRTAMSAATDNASELVENLSRIANQARQAQITQEITEIVGGASAL 318          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SORC5 (ATP synthase gamma chain OS=Sorangium cellulosum (strain So ce56) GN=atpG PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.212e-13
Identity = 36/83 (43.37%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  228 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 476
            L+E D   +L+ ++P+Y++  ILRA  ES ASE+ A+++ M     NA E+  NL++ YN+ RQ  IT EL+EI+ G+EAL +
Sbjct:  241 LYEPDKGALLERLVPMYVDISILRALYESMASELGAKLTAMDAANKNAKEVIDNLTLEYNKARQAAITKELMEIIGGSEALKE 323          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHEWM (ATP synthase gamma chain OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=atpG PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.212e-13
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP ++LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDNA EL  +L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  206 LYEPDPKELLDTLLVRYVESQVYQGVVENIASEQAARMVAMKAATDNAGELISDLELVYNKARQAAITQELSEIVSGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SHEPW (ATP synthase gamma chain OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=atpG PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.212e-13
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP ++LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDNA EL  +L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  206 LYEPDPKELLDTLLVRYVESQVYQGVVENIASEQAARMVAMKAATDNAGELISDLELVYNKARQAAITQELSEIVSGAAAV 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MYCS2 (ATP synthase gamma chain OS=Mycobacterium smegmatis GN=atpG PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.212e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  234 LMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 482
            L  FE DP  + DA++P Y+ +++  A  E+ ASE A+R   M   TDNAD+L K L++A N+ERQ +IT E+ EIV GA AL
Sbjct:  221 LYSFEPDPETLFDALLPRYIATRVYAALLEAAASESASRRRAMKSATDNADDLIKALTLAANRERQAQITQEISEIVGGANAL 303          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MANSM (ATP synthase gamma chain OS=Mannheimia succiniciproducens (strain MBEL55E) GN=atpG PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.212e-13
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = -1
Query:  234 PNEGKMIVARDSVTFNKGELSPLM--LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 548
            P+  +++   +  T N GE       ++E DP  +LD+++  Y+ SQ+ ++  ++ ASE AARM  M   TDNA  L  +L + YN+ RQ  IT EL EIVAGA A+
Sbjct:  183 PSFAQLVPLPELDTDNLGERQQAWDYIYEPDPKMLLDSLLTRYLESQVYQSVVDNLASEQAARMVAMKAATDNAGNLINDLQLVYNKARQASITNELNEIVAGAAAI 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_HALOH (ATP synthase gamma chain OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = -1
Query:  234 DSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 518
            D     +G+++   L+E  P  ++D ++P Y+ + +  A  E+ ASE  ARM+ M   TDNA EL   L+++YN+ RQ  IT E+ EIV GAEAL
Sbjct:  192 DDKNQEEGKINTEYLYEPSPEAVMDILLPSYIKNILYSALIEAKASEFGARMTAMDAATDNAGELIDKLTLSYNRARQAAITKEITEIVGGAEAL 286          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ARTAT (ATP synthase gamma chain OS=Arthrobacter aurescens (strain TC1) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = -1
Query:  234 NKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 503
            ++ EL PL  FE +  Q+LDA++P Y+ S+I  A  ++ ASE+AAR   M    DNA +L K  +   N  RQ +IT EL EIVAGA+AL
Sbjct:  205 SESELLPLYEFEPETEQVLDALLPRYIESRIFAAMLQAAASELAARQRAMKSAGDNATDLIKKYTRLRNTARQAEITQELSEIVAGADAL 294          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_AERHH (ATP synthase gamma chain OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.583e-13
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E DP Q+LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDNA  L  +L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  208 LYEPDPKQLLDTLLIRYVESQVYQGVVENLASEQAARMVAMQAATDNAGNLINDLQLVYNKARQASITQELTEIVSGAAAV 288          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_MYCVP9.281e-1448.19ATP synthase gamma chain OS=Mycobacterium vanbaale... [more]
ATPG_CORU79.281e-1444.66ATP synthase gamma chain OS=Corynebacterium urealy... [more]
ATPG_SORC51.212e-1343.37ATP synthase gamma chain OS=Sorangium cellulosum (... [more]
ATPG_SHEWM1.212e-1348.15ATP synthase gamma chain OS=Shewanella woodyi (str... [more]
ATPG_SHEPW1.212e-1348.15ATP synthase gamma chain OS=Shewanella piezotolera... [more]
ATPG_MYCS21.212e-1348.19ATP synthase gamma chain OS=Mycobacterium smegmati... [more]
ATPG_MANSM1.212e-1339.25ATP synthase gamma chain OS=Mannheimia succinicipr... [more]
ATPG_HALOH1.583e-1341.05ATP synthase gamma chain OS=Halothermothrix orenii... [more]
ATPG_ARTAT1.583e-1346.67ATP synthase gamma chain OS=Arthrobacter aurescens... [more]
ATPG_AERHH1.583e-1348.15ATP synthase gamma chain OS=Aeromonas hydrophila s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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