CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PELLD (ATP synthase gamma chain OS=Pelodictyon luteolum (strain DSM 273) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.068e-13
Identity = 37/81 (45.68%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E  PA I++ ++P ++N+Q+     ES A+E AARM+ M   T+NA EL + L+++YN+ RQ  IT EL EIV GA+AL
Sbjct:  208 IYEPSPAAIIEELVPKHLNTQVWGMMLESNAAEQAARMTAMDSATENAKELLRGLNISYNRARQAAITKELSEIVGGADAL 288          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_METS4 (ATP synthase gamma chain OS=Methylobacterium sp. (strain 4-46) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.068e-13
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E D  +IL A++P  +  QILRA  E+ ASE  ARMS M   T NA E+ K  ++ YN+ RQ +IT EL+EI++GAEAL
Sbjct:  213 YEPDEGEILAALLPKNLTVQILRALLENAASEQGARMSAMDNATRNAGEMIKKQTLVYNRTRQAQITKELIEIISGAEAL 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_GRAFK (ATP synthase gamma chain OS=Gramella forsetii (strain KT0803) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.068e-13
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            +FE    +I+  ++P  +  Q+ +A ++SFASE  ARM+ M   T+NA EL+ +L ++YN+ RQ  IT E+LEIV GAEAL
Sbjct:  204 IFEPSKLEIVKDLIPKSLKMQLFKALRDSFASEHGARMTAMHKATENATELRDDLKLSYNKARQASITNEILEIVGGAEAL 284          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_RHILO (ATP synthase gamma chain OS=Rhizobium loti GN=atpG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 36/80 (45.00%), Postives = 55/80 (68.75%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E +P +IL  ++P  ++ Q+ RA  E+ A E+ A+MS M   T NA E+   LS+ YN++RQ +IT EL+EI++GAEAL
Sbjct:  215 YEPEPGEILSDLIPRNISVQVFRALLENAAGEMGAKMSAMDNATRNAGEMINKLSITYNRQRQAQITKELIEIISGAEAL 294          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_MYCGI (ATP synthase gamma chain OS=Mycobacterium gilvum (strain PYR-GCK) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = -1
Query:  234 LMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 482
            L  FE DP  + DA++P Y+ +++  A  E+ ASE A+R   M   TDNAD+L K L ++ N+ERQ +IT E+ EIV GA AL
Sbjct:  223 LFSFEPDPETLFDALLPRYVATRVYAALLEAAASESASRRRAMKSATDNADDLIKALKLSANRERQAQITQEISEIVGGANAL 305          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_METNO (ATP synthase gamma chain OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = -1
Query:  234 PNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 548
            P   ++I A  S      +      +E +  +IL A++P  +  QILRA  E+ ASE  ARMS M   T NA E+ K  ++ YN+ RQ  IT EL+EI++GAEAL
Sbjct:  188 PTAQQIIPAEISPASESAQTDAAYEYEPEEGEILAALLPKNLTVQILRALLENAASEQGARMSAMDSATRNAGEMIKKQTLVYNRTRQAMITKELIEIISGAEAL 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_HAES2 (ATP synthase gamma chain OS=Haemophilus somnus (strain 2336) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +P  +LD+++  Y+ SQ+ +A  E+ ASE AARM  M   TDNA  L  +L + YN+ RQ  IT EL EIVAGA A+
Sbjct:  209 IYEPNPQTLLDSLLVRYLESQVYQAVVENLASEQAARMVAMKAATDNAGNLINDLQLVYNKARQASITNELNEIVAGAAAI 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_HAES1 (ATP synthase gamma chain OS=Haemophilus somnus (strain 129Pt) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +P  +LD+++  Y+ SQ+ +A  E+ ASE AARM  M   TDNA  L  +L + YN+ RQ  IT EL EIVAGA A+
Sbjct:  209 IYEPNPQTLLDSLLVRYLESQVYQAVVENLASEQAARMVAMKAATDNAGNLINDLQLVYNKARQASITNELNEIVAGAAAI 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_HAEI8 (ATP synthase gamma chain OS=Haemophilus influenzae (strain 86-028NP) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            L+E +P  +LD+++  Y+ SQI +A  ++ ASE AARM  M   TDNA  L  +L + YN+ RQ  IT EL EIVAGA A+
Sbjct:  209 LYEPEPKALLDSLLVRYLESQIYQAVVDNLASEQAARMVAMKAATDNAGNLINDLRLVYNKARQASITNELNEIVAGAAAI 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_AERS4 (ATP synthase gamma chain OS=Aeromonas salmonicida (strain A449) GN=atpG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E DP Q+LD ++  Y+ SQ+ +   E+ ASE AARM  M   TDNA  L  +L + YN+ RQ  IT EL EIV+GA A+
Sbjct:  208 IYEPDPKQLLDTLLIRYVESQVYQGVVENLASEQAARMVAMQAATDNAGNLINDLQLVYNKARQASITQELTEIVSGAAAV 288          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_PELLD2.068e-1345.68ATP synthase gamma chain OS=Pelodictyon luteolum (... [more]
ATPG_METS42.068e-1350.00ATP synthase gamma chain OS=Methylobacterium sp. (... [more]
ATPG_GRAFK2.068e-1345.68ATP synthase gamma chain OS=Gramella forsetii (str... [more]
ATPG_RHILO2.700e-1345.00ATP synthase gamma chain OS=Rhizobium loti GN=atpG... [more]
ATPG_MYCGI2.700e-1346.99ATP synthase gamma chain OS=Mycobacterium gilvum (... [more]
ATPG_METNO2.700e-1340.95ATP synthase gamma chain OS=Methylobacterium nodul... [more]
ATPG_HAES22.700e-1346.91ATP synthase gamma chain OS=Haemophilus somnus (st... [more]
ATPG_HAES12.700e-1346.91ATP synthase gamma chain OS=Haemophilus somnus (st... [more]
ATPG_HAEI82.700e-1348.15ATP synthase gamma chain OS=Haemophilus influenzae... [more]
ATPG_AERS42.700e-1346.91ATP synthase gamma chain OS=Aeromonas salmonicida ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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