CF831927

Overview
NameCF831927
Unique NameCF831927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_CYAA5 (ATP synthase gamma chain OS=Cyanothece sp. (strain ATCC 51142) GN=atpG PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.231e-14
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 3
Query:   24 TIEGKMIVERPNETFNKGELSPLKLFDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            T EGK+ VER   T          +F+Q P QILDA++PLY+N Q+LRAL+E+ A+E A+RM+AM
Sbjct:  210 TREGKLQVERETVTQTMSSFPQDMIFEQDPVQILDALLPLYINNQLLRALQEAAASELAARMTAM 274          

HSP 2 Score: 35.8094 bits (81), Expect = 3.231e-14
Identity = 17/27 (62.96%), Postives = 23/27 (85.19%), Query Frame = 2
Query:  260 LSLAYNQERQAKITGELLEIVAGA*AL 340
            L+L+YN+ RQA IT +L+E+VAGA AL
Sbjct:  288 LTLSYNKARQAAITQQLMEVVAGANAL 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_CYAP7 (ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 7424) GN=atpG PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 3.231e-14
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 3
Query:   33 GKMIVERPNETFNKGELSPLKLFDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            GK  VER   + +        +F+Q P QILD+++PLY+N Q+LRAL+ES A+E A+RM+AM
Sbjct:  213 GKFQVEREKVSASVSSFPQDMIFEQDPVQILDSLLPLYLNNQLLRALQESAASELAARMTAM 274          

HSP 2 Score: 40.0466 bits (92), Expect = 3.231e-14
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 2
Query:  254 KNLSLAYNQERQAKITGELLEIVAGA*AL 340
            K LSL+YN+ RQA IT E+LE+VAGA AL
Sbjct:  286 KTLSLSYNKARQAAITQEILEVVAGANAL 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_SYNP1 (ATP synthase gamma chain OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 9.206e-14
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 3
Query:   21 TTIEGKMIVERPNETFNKGELSPLKLFDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            TT    + V R   T N   L P  +F+Q P QILDA++PLY++ Q+LRAL+E+ A+E A+RM+AM
Sbjct:  209 TTRASHLEVNREKVTSNLPALPPDMIFEQDPVQILDALLPLYLSNQLLRALQEAAASELAARMTAM 274          

HSP 2 Score: 36.965 bits (84), Expect = 9.206e-14
Identity = 18/27 (66.67%), Postives = 23/27 (85.19%), Query Frame = 2
Query:  260 LSLAYNQERQAKITGELLEIVAGA*AL 340
            L+L+YN+ RQA IT E+LE+VAGA AL
Sbjct:  288 LTLSYNKARQAAITQEILEVVAGAEAL 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_MICAN (ATP synthase gamma chain OS=Microcystis aeruginosa (strain NIES-843) GN=atpG PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.554e-13
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 3
Query:   24 TIEGKMIVERPNETFNKGELSPLKL-FDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            T EGK  V+R        ++ P  + F+Q P QILD+++PLY+N Q+LRAL+ES A+E A+RM+AM
Sbjct:  210 TKEGKFKVQREKMASQPAQVFPQDMIFEQNPVQILDSLLPLYLNNQLLRALQESAASELAARMTAM 275          

HSP 2 Score: 36.1946 bits (82), Expect = 1.554e-13
Identity = 19/27 (70.37%), Postives = 21/27 (77.78%), Query Frame = 2
Query:  260 LSLAYNQERQAKITGELLEIVAGA*AL 340
            LS  YN+ RQA IT ELLE+VAGA AL
Sbjct:  289 LSRTYNKARQAAITQELLEVVAGANAL 315          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_SYNJA (ATP synthase gamma chain OS=Synechococcus sp. (strain JA-3-3Ab) GN=atpG PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.018e-13
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 3
Query:   33 GKMIVERPNETFNKGELSPLKLFDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            G+  VER           P  +F+Q P QILDA++PLY+N Q+LRAL+E+ A+E A+RM+AM
Sbjct:  213 GEFTVERSKIVAAVSAPPPDMIFEQDPVQILDALLPLYLNNQLLRALQEAAASELAARMTAM 274          

HSP 2 Score: 38.5058 bits (88), Expect = 2.018e-13
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 2
Query:  254 KNLSLAYNQERQAKITGELLEIVAGA*AL 340
            + L LAYN+ RQA IT E+LE+VAGA AL
Sbjct:  286 RTLGLAYNKARQAAITQEILEVVAGAEAL 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_SYNP6 (ATP synthase gamma chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG PE=3 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 2.621e-13
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 3
Query:   21 TTIEGKMIVERPNETFNKGELSPLKLFDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            TT  G   VER   T     L    +F+Q PAQIL A++PLY++ Q+LRAL+E+ A+E A+RM+AM
Sbjct:  209 TTRGGSFTVEREKLTSEVAPLPRDMIFEQDPAQILSALLPLYLSNQLLRALQEAAASELAARMTAM 274          

HSP 2 Score: 37.3502 bits (85), Expect = 2.621e-13
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 2
Query:  260 LSLAYNQERQAKITGELLEIVAGA*AL 340
            L+L YN+ RQA IT ELLE+VAGA AL
Sbjct:  288 LTLVYNKARQAAITQELLEVVAGAEAL 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_SYNE7 (ATP synthase gamma chain OS=Synechococcus elongatus (strain PCC 7942) GN=atpG PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.621e-13
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 3
Query:   21 TTIEGKMIVERPNETFNKGELSPLKLFDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            TT  G   VER   T     L    +F+Q PAQIL A++PLY++ Q+LRAL+E+ A+E A+RM+AM
Sbjct:  209 TTRGGSFTVEREKLTSEVAPLPRDMIFEQDPAQILSALLPLYLSNQLLRALQEAAASELAARMTAM 274          

HSP 2 Score: 37.3502 bits (85), Expect = 2.621e-13
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 2
Query:  260 LSLAYNQERQAKITGELLEIVAGA*AL 340
            L+L YN+ RQA IT ELLE+VAGA AL
Sbjct:  288 LTLVYNKARQAAITQELLEVVAGAEAL 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_SYNR3 (ATP synthase gamma chain OS=Synechococcus sp. (strain RCC307) GN=atpG PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 2.621e-13
Identity = 30/65 (46.15%), Postives = 48/65 (73.85%), Query Frame = 3
Query:   24 TIEGKMIVERPNETFNKGELSPLKLFDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            T EG++ VER + +  + +L    +F+Q P+Q+LD ++PLY+  Q+LR+L+ES A+E ASRM+AM
Sbjct:  210 TKEGELGVERSSASNQEDKLKSDLVFEQSPSQLLDVLLPLYLQNQVLRSLQESAASELASRMTAM 274          

HSP 2 Score: 35.4242 bits (80), Expect = 2.621e-13
Identity = 17/29 (58.62%), Postives = 22/29 (75.86%), Query Frame = 2
Query:  254 KNLSLAYNQERQAKITGELLEIVAGA*AL 340
            K L+L YN+ RQA IT E+LE+V GA A+
Sbjct:  286 KELTLDYNKARQAAITQEILEVVGGASAM 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_CYAP4 (ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=atpG PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.621e-13
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 3
Query:   21 TTIEGKMIVERPNETFNKGELSPLKLFDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            TT  G+  V+R   +     +    +F+Q P QILDA++PLY+N Q+LRAL+ES A+E A+RM+AM
Sbjct:  209 TTRGGRFEVQREKVSSATQSMPQDMIFEQDPLQILDALLPLYLNNQLLRALQESAASELAARMTAM 274          

HSP 2 Score: 37.3502 bits (85), Expect = 2.621e-13
Identity = 18/29 (62.07%), Postives = 22/29 (75.86%), Query Frame = 2
Query:  254 KNLSLAYNQERQAKITGELLEIVAGA*AL 340
            K LS+ YN+ RQA IT E+LE+V GA AL
Sbjct:  286 KGLSMTYNKARQAAITQEILEVVGGAEAL 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_ACAM1 (ATP synthase gamma chain OS=Acaryochloris marina (strain MBIC 11017) GN=atpG PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 3.404e-13
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 3
Query:   21 TTIEGKMIVERPN-ETFNKGELSPLKLFDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            TT  G+  VER   E     E+    +F+Q P QILDA++PLY+N Q+LRAL+ES A+E A+RM+AM
Sbjct:  210 TTRGGQFQVERERMERGTPQEMPSDMIFEQNPIQILDALLPLYLNNQLLRALQESAASELAARMTAM 276          

HSP 2 Score: 36.1946 bits (82), Expect = 3.404e-13
Identity = 18/27 (66.67%), Postives = 22/27 (81.48%), Query Frame = 2
Query:  260 LSLAYNQERQAKITGELLEIVAGA*AL 340
            L+L+YN+ RQA IT ELLE+V GA AL
Sbjct:  290 LTLSYNKARQAAITQELLEVVGGAEAL 316          
The following BLAST results are available for this feature:
BLAST of CF831927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
ATPG_CYAA53.231e-1450.77ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_CYAP73.231e-1448.39ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_SYNP19.206e-1448.48ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_MICAN1.554e-1348.48ATP synthase gamma chain OS=Microcystis aeruginosa... [more]
ATPG_SYNJA2.018e-1348.39ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SYNP62.621e-1348.48ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SYNE72.621e-1348.48ATP synthase gamma chain OS=Synechococcus elongatu... [more]
ATPG_SYNR32.621e-1346.15ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_CYAP42.621e-1346.97ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_ACAM13.404e-1350.75ATP synthase gamma chain OS=Acaryochloris marina (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831927 ID=CF831927; Name=CF831927; organism=Citrus sinensis; type=EST; length=502bp
GGATGAGTTGCCCTATAAAGACAACTATTGAAGGGAAGATGATTGTCGAG
AGACCTAACGAGACCTTCAATAAAGGGGAATTATCGCCTCTTAAGCTGTT
TGACCAATATCCGGCTCAGATTCTTGATGCAATGATGCCACTCTATATGA
ATAGACAGATTTTGAGGGCATTGCGAGAGTCATTCGCTACTGAGGATGCA
TCGAGGATGAGTGCCATGATGTACTGCTACTGATAATGCTGATGAGTTGA
AATAAAAATCTTTCTCTTGCTTATAACCAAGAACGCCAGGCTAAAATCAC
TGGTGAACTATTGGAGATTGTTGCTGGAGCCTAGGCACTTACACAGGTTG
ATTAATTTGACCCTTTGTTTTTCCTTGACTTGATTTTTCTATATCCCTTT
TTTTTGTTTGGGGGGGTTGATAATATTGCAGTTCACATCATATGCTAGTT
AGTATATTCATCATTGAACGCTGGCTTATAATTGGTATTGATGACTTGAG
TA
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