CF831927

Overview
NameCF831927
Unique NameCF831927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_TRIEI (ATP synthase gamma chain OS=Trichodesmium erythraeum (strain IMS101) GN=atpG PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 8.206e-11
Identity = 24/41 (58.54%), Postives = 34/41 (82.93%), Query Frame = 3
Query:   96 LFDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            +F+Q P QILDA++PL++  Q+LRA +ES A+E ASRM+AM
Sbjct:  234 IFEQDPIQILDALLPLFLTNQLLRAWQESSASELASRMTAM 274          

HSP 2 Score: 36.5798 bits (83), Expect = 8.206e-11
Identity = 18/27 (66.67%), Postives = 22/27 (81.48%), Query Frame = 2
Query:  260 LSLAYNQERQAKITGELLEIVAGA*AL 340
            L+LAYN+ RQA IT E+LE+V GA AL
Sbjct:  288 LTLAYNKARQAAITQEILEVVGGANAL 314          
The following BLAST results are available for this feature:
BLAST of CF831927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
ATPG_TRIEI8.206e-1158.54ATP synthase gamma chain OS=Trichodesmium erythrae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831927 ID=CF831927; Name=CF831927; organism=Citrus sinensis; type=EST; length=502bp
GGATGAGTTGCCCTATAAAGACAACTATTGAAGGGAAGATGATTGTCGAG
AGACCTAACGAGACCTTCAATAAAGGGGAATTATCGCCTCTTAAGCTGTT
TGACCAATATCCGGCTCAGATTCTTGATGCAATGATGCCACTCTATATGA
ATAGACAGATTTTGAGGGCATTGCGAGAGTCATTCGCTACTGAGGATGCA
TCGAGGATGAGTGCCATGATGTACTGCTACTGATAATGCTGATGAGTTGA
AATAAAAATCTTTCTCTTGCTTATAACCAAGAACGCCAGGCTAAAATCAC
TGGTGAACTATTGGAGATTGTTGCTGGAGCCTAGGCACTTACACAGGTTG
ATTAATTTGACCCTTTGTTTTTCCTTGACTTGATTTTTCTATATCCCTTT
TTTTTGTTTGGGGGGGTTGATAATATTGCAGTTCACATCATATGCTAGTT
AGTATATTCATCATTGAACGCTGGCTTATAATTGGTATTGATGACTTGAG
TA
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