CF831928
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_GOSBA (50S ribosomal protein L2, chloroplastic OS=Gossypium barbadense GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 1.264e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249 HSP 2 Score: 42.3578 bits (98), Expect = 1.264e-12 Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WG+ AL RRSRK+NKY+DNLIL Sbjct: 242 KKPATPWGHPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_PHAAO (50S ribosomal protein L2, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl2-A PE=2 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 1.265e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 42.3578 bits (98), Expect = 1.265e-12 Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+D+LIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDSLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_BUXMI (50S ribosomal protein L2, chloroplastic OS=Buxus microphylla GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 1.265e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 208 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 247 HSP 2 Score: 42.3578 bits (98), Expect = 1.265e-12 Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+D+LIL Sbjct: 240 KKPTTPWGYPALGRRSRKRNKYSDSLIL 267
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2B_LIRTU (50S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera GN=rpl2-B PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 1.265e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 42.3578 bits (98), Expect = 1.265e-12 Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+D+LIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDSLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2A_LIRTU (50S ribosomal protein L2-A, chloroplastic OS=Liriodendron tulipifera GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 1.265e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 42.3578 bits (98), Expect = 1.265e-12 Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+D+LIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDSLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_EUCGG (50S ribosomal protein L2, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 1.642e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249 HSP 2 Score: 41.9726 bits (97), Expect = 1.642e-12 Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+ KY+DNLIL Sbjct: 242 KKPATPWGYPALGRRSRKRKKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2A_CHLSC (50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus GN=rpl2-A PE=3 SV=1) HSP 1 Score: 50.8322 bits (120), Expect = 2.132e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 212 CWLGKRPVVRGVVMNPVDHPHGGGEGRSPIGRKKPTTPWG 251 HSP 2 Score: 42.3578 bits (98), Expect = 2.132e-12 Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+D+LIL Sbjct: 244 KKPTTPWGYPALGRRSRKRNKYSDSLIL 271
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2B_CHLSC (50S ribosomal protein L2-B, chloroplastic OS=Chloranthus spicatus GN=rpl2-B PE=3 SV=1) HSP 1 Score: 50.8322 bits (120), Expect = 2.133e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRSPIGRKKPTTPWG 249 HSP 2 Score: 42.3578 bits (98), Expect = 2.133e-12 Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+D+LIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDSLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_TOBAC (50S ribosomal protein L2, chloroplastic OS=Nicotiana tabacum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_SOLTU (50S ribosomal protein L2, chloroplastic OS=Solanum tuberosum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269 The following BLAST results are available for this feature:
BLAST of CF831928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831928 ID=CF831928; Name=CF831928; organism=Citrus sinensis; type=EST; length=852bpback to top |