CF831928

Overview
NameCF831928
Unique NameCF831928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6872 contig Csv1_Contig6872:177..1028. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_SOLLC (50S ribosomal protein L2, chloroplastic OS=Solanum lycopersicum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2
Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249          

HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3
Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+DNLIL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269          
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_SOLBU (50S ribosomal protein L2, chloroplastic OS=Solanum bulbocastanum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2
Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249          

HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3
Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+DNLIL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269          
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_PANGI (50S ribosomal protein L2, chloroplastic OS=Panax ginseng GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2
Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249          

HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3
Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+DNLIL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269          
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_NICTO (50S ribosomal protein L2, chloroplastic OS=Nicotiana tomentosiformis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2
Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249          

HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3
Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+DNLIL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269          
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_NICSY (50S ribosomal protein L2, chloroplastic OS=Nicotiana sylvestris GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2
Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249          

HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3
Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+DNLIL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269          
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_DAUCA (50S ribosomal protein L2, chloroplastic OS=Daucus carota GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2
Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249          

HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3
Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+DNLIL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269          
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2B_COFAR (50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2
Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  216 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 251          

HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3
Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+DNLIL
Sbjct:  244 KKPTTPWGYPALGRRSRKRNKYSDNLIL 271          
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2A_COFAR (50S ribosomal protein L2-A, chloroplastic OS=Coffea arabica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2
Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249          

HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3
Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+DNLIL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269          
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2A_ATRBE (50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2
Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249          

HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3
Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+DNLIL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269          
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_ILLOL (50S ribosomal protein L2, chloroplastic OS=Illicium oligandrum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 3.596e-12
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2
Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RK+ +TP G
Sbjct:  212 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKRPTTPWG 251          

HSP 2 Score: 41.9726 bits (97), Expect = 3.596e-12
Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = -3
Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            KRP   WGY AL RRSRK+NKY+D+ IL
Sbjct:  244 KRPTTPWGYPALGRRSRKRNKYSDSFIL 271          
The following BLAST results are available for this feature:
BLAST of CF831928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RK2_SOLLC2.769e-1261.1150S ribosomal protein L2, chloroplastic OS=Solanum... [more]
RK2_SOLBU2.769e-1261.1150S ribosomal protein L2, chloroplastic OS=Solanum... [more]
RK2_PANGI2.769e-1261.1150S ribosomal protein L2, chloroplastic OS=Panax g... [more]
RK2_NICTO2.769e-1261.1150S ribosomal protein L2, chloroplastic OS=Nicotia... [more]
RK2_NICSY2.769e-1261.1150S ribosomal protein L2, chloroplastic OS=Nicotia... [more]
RK2_DAUCA2.769e-1261.1150S ribosomal protein L2, chloroplastic OS=Daucus ... [more]
RK2B_COFAR2.769e-1261.1150S ribosomal protein L2-B, chloroplastic OS=Coffe... [more]
RK2A_COFAR2.769e-1261.1150S ribosomal protein L2-A, chloroplastic OS=Coffe... [more]
RK2A_ATRBE2.769e-1261.1150S ribosomal protein L2-A, chloroplastic OS=Atrop... [more]
RK2_ILLOL3.596e-1257.5050S ribosomal protein L2, chloroplastic OS=Illiciu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831928 ID=CF831928; Name=CF831928; organism=Citrus sinensis; type=EST; length=852bp
GCCCCTTTAGACTATGTCATGTGCATTAAAATTTCGATTTTCTCTCCTAT
TTAATACCGTTGAAAAGAATTAAATTATCATTATATTTATTCTTTTTCCT
GCTTCGTCTTCAAAGTGCAAGATAACCCCAAAGGGGTTGAGGCCTTTTTT
CTACAAATCGATACCCTTCCTTTACCACCCCAATGGAGGTAGTCTATGGA
ATTCATAACTACTCCTCTTACAGCAGGATTCTTGAACCAACAATCAGTTC
AAGAAATTAAAAAAAAGGCAGACCTGAAATAAGAATAGAACTCTCAAGTT
TTGCTTCAAAATATAAATAAGTGAAAACCATAGATTTCAGATTTATTAAT
GAAAGCTATGAGAAAGTTTGGTTTTACACCAGTGCATTATTTAGAGGGTT
CAATGAATGATGATACCCCTCTGTTAATATTGTTGTTACTCTGCAGCTGG
TTTGCTAGTCTCATCCTTGCATCTAGGTTGATGATTGTGATTTTTCAACT
CATCTCCAGCCACAAGAAAGAATGCAGTGTGTCTGAAAAAATTCATCATT
TTGATTTTTGAGTCAGCATCAATTTCTGGGGTACTGTCTAGTGCAATCTG
CATATGATGTAACCATCTCTCTGCAGCTTGATGTGTTACTGGGAATGGTC
GATGACGTCCAATTAATGCAGGATGGCCTTTCCTCTGAGAATACAGAGGA
GGCCCTCCCATTCTCTGCACAAAAAACTCATATTGGTTCTGAATTGCTTC
TTCTTTATTCGAATTTGCAAAAATTGACCTAAACCACTCTTCCTCGTCGT
CATAAACCCTGGTATAGAAGTTGGTGGAGAGATTGATGAAAGTTTGAAGG
CC
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