CF831928
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_SOLLC (50S ribosomal protein L2, chloroplastic OS=Solanum lycopersicum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_SOLBU (50S ribosomal protein L2, chloroplastic OS=Solanum bulbocastanum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_PANGI (50S ribosomal protein L2, chloroplastic OS=Panax ginseng GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_NICTO (50S ribosomal protein L2, chloroplastic OS=Nicotiana tomentosiformis GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_NICSY (50S ribosomal protein L2, chloroplastic OS=Nicotiana sylvestris GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_DAUCA (50S ribosomal protein L2, chloroplastic OS=Daucus carota GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2B_COFAR (50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica GN=rpl2-B PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 216 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 251 HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 244 KKPTTPWGYPALGRRSRKRNKYSDNLIL 271
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2A_COFAR (50S ribosomal protein L2-A, chloroplastic OS=Coffea arabica GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2A_ATRBE (50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna GN=rpl2-A PE=3 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 2.769e-12 Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 44.2838 bits (103), Expect = 2.769e-12 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+DNLIL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_ILLOL (50S ribosomal protein L2, chloroplastic OS=Illicium oligandrum GN=rpl2 PE=3 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 3.596e-12 Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RK+ +TP G Sbjct: 212 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKRPTTPWG 251 HSP 2 Score: 41.9726 bits (97), Expect = 3.596e-12 Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 KRP WGY AL RRSRK+NKY+D+ IL Sbjct: 244 KRPTTPWGYPALGRRSRKRNKYSDSFIL 271 The following BLAST results are available for this feature:
BLAST of CF831928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831928 ID=CF831928; Name=CF831928; organism=Citrus sinensis; type=EST; length=852bpback to top |