CF831928
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_PEA (50S ribosomal protein L2, chloroplastic OS=Pisum sativum GN=rpl2 PE=3 SV=1) HSP 1 Score: 49.6766 bits (117), Expect = 3.597e-12 Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = -2 Query: 126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233 K P VRGVVMN +D+ H GG+GR I RKK STP G Sbjct: 213 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWG 248 HSP 2 Score: 42.743 bits (99), Expect = 3.597e-12 Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RR+RK NKY+DNLIL Sbjct: 241 KKPSTPWGYPALGRRTRKSNKYSDNLIL 268
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2B_SOYBN (50S ribosomal protein L2-B, chloroplastic OS=Glycine max GN=rpl2-B PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 4.669e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249 HSP 2 Score: 40.4318 bits (93), Expect = 4.669e-12 Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WG+ AL RRSRK+ KY+DNLIL Sbjct: 242 KKPATPWGFPALGRRSRKRKKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2A_SOYBN (50S ribosomal protein L2-A, chloroplastic OS=Glycine max GN=rpl2-A PE=3 SV=2) HSP 1 Score: 51.6026 bits (122), Expect = 4.669e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249 HSP 2 Score: 40.4318 bits (93), Expect = 4.669e-12 Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WG+ AL RRSRK+ KY+DNLIL Sbjct: 242 KKPATPWGFPALGRRSRKRKKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_LOTJA (50S ribosomal protein L2, chloroplastic OS=Lotus japonicus GN=rpl2-A PE=3 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 4.669e-12 Identity = 24/40 (60.00%), Postives = 27/40 (67.50%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWG 249 HSP 2 Score: 41.5874 bits (96), Expect = 4.669e-12 Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+ KY+DNLIL Sbjct: 242 KKPVTPWGYPALGRRSRKRKKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_PIPCE (50S ribosomal protein L2, chloroplastic OS=Piper cenocladum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 4.671e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249 HSP 2 Score: 40.4318 bits (93), Expect = 4.671e-12 Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+D IL Sbjct: 242 KKPATPWGYPALGRRSRKRNKYSDRFIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_ACOCL (50S ribosomal protein L2, chloroplastic OS=Acorus calamus GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 4.671e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 40.4318 bits (93), Expect = 4.671e-12 Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+D IL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDRFIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_ACOAM (50S ribosomal protein L2, chloroplastic OS=Acorus americanus GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 4.671e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249 HSP 2 Score: 40.4318 bits (93), Expect = 4.671e-12 Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+NKY+D IL Sbjct: 242 KKPTTPWGYPALGRRSRKRNKYSDRFIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_PHAVU (50S ribosomal protein L2, chloroplastic OS=Phaseolus vulgaris GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 6.063e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPIVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249 HSP 2 Score: 40.4318 bits (93), Expect = 6.063e-12 Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WG+ AL RRSRK+ KY+DNLIL Sbjct: 242 KKPATPWGFPALGRRSRKRKKYSDNLIL 269
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_PHAAN (50S ribosomal protein L2, chloroplastic OS=Phaseolus angularis GN=rpl2 PE=3 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 6.063e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 211 CWLGKRPIVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 250 HSP 2 Score: 40.4318 bits (93), Expect = 6.063e-12 Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WG+ AL RRSRK+ KY+DNLIL Sbjct: 243 KKPATPWGFPALGRRSRKRKKYSDNLIL 270
BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_CERDE (50S ribosomal protein L2, chloroplastic OS=Ceratophyllum demersum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 6.066e-12 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2 Query: 126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242 CW K P VRGVVMN +D+ H GG+GR I RKK +TP G Sbjct: 210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249 HSP 2 Score: 40.0466 bits (92), Expect = 6.066e-12 Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = -3 Query: 65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148 K+P WGY AL RRSRK+ KY+D+LIL Sbjct: 242 KKPATPWGYPALGRRSRKRKKYSDSLIL 269 The following BLAST results are available for this feature:
BLAST of CF831928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >CF831928 ID=CF831928; Name=CF831928; organism=Citrus sinensis; type=EST; length=852bpback to top |