CF831928 | Citrus Genome Database

Overview


Name	CF831928
Unique Name	CF831928
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	852

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6872	contig	Csv1_Contig6872:177..1028.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_PEA (50S ribosomal protein L2, chloroplastic OS=Pisum sativum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 3.597e-12
Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = -2

Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK STP G
Sbjct:  213 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWG 248

HSP 2 Score: 42.743 bits (99), Expect = 3.597e-12
Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RR+RK NKY+DNLIL
Sbjct:  241 KKPSTPWGYPALGRRTRKSNKYSDNLIL 268

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2B_SOYBN (50S ribosomal protein L2-B, chloroplastic OS=Glycine max GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 4.669e-12
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249

HSP 2 Score: 40.4318 bits (93), Expect = 4.669e-12
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WG+ AL RRSRK+ KY+DNLIL
Sbjct:  242 KKPATPWGFPALGRRSRKRKKYSDNLIL 269

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2A_SOYBN (50S ribosomal protein L2-A, chloroplastic OS=Glycine max GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 51.6026 bits (122), Expect = 4.669e-12
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249

HSP 2 Score: 40.4318 bits (93), Expect = 4.669e-12
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WG+ AL RRSRK+ KY+DNLIL
Sbjct:  242 KKPATPWGFPALGRRSRKRKKYSDNLIL 269

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_LOTJA (50S ribosomal protein L2, chloroplastic OS=Lotus japonicus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 4.669e-12
Identity = 24/40 (60.00%), Postives = 27/40 (67.50%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RKK  TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWG 249

HSP 2 Score: 41.5874 bits (96), Expect = 4.669e-12
Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+ KY+DNLIL
Sbjct:  242 KKPVTPWGYPALGRRSRKRKKYSDNLIL 269

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_PIPCE (50S ribosomal protein L2, chloroplastic OS=Piper cenocladum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 4.671e-12
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249

HSP 2 Score: 40.4318 bits (93), Expect = 4.671e-12
Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+D  IL
Sbjct:  242 KKPATPWGYPALGRRSRKRNKYSDRFIL 269

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_ACOCL (50S ribosomal protein L2, chloroplastic OS=Acorus calamus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 4.671e-12
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249

HSP 2 Score: 40.4318 bits (93), Expect = 4.671e-12
Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+D  IL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDRFIL 269

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_ACOAM (50S ribosomal protein L2, chloroplastic OS=Acorus americanus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 4.671e-12
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249

HSP 2 Score: 40.4318 bits (93), Expect = 4.671e-12
Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+D  IL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDRFIL 269

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_PHAVU (50S ribosomal protein L2, chloroplastic OS=Phaseolus vulgaris GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 6.063e-12
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  210 CWLGKRPIVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249

HSP 2 Score: 40.4318 bits (93), Expect = 6.063e-12
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WG+ AL RRSRK+ KY+DNLIL
Sbjct:  242 KKPATPWGFPALGRRSRKRKKYSDNLIL 269

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_PHAAN (50S ribosomal protein L2, chloroplastic OS=Phaseolus angularis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 6.063e-12
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  211 CWLGKRPIVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 250

HSP 2 Score: 40.4318 bits (93), Expect = 6.063e-12
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WG+ AL RRSRK+ KY+DNLIL
Sbjct:  243 KKPATPWGFPALGRRSRKRKKYSDNLIL 270

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_CERDE (50S ribosomal protein L2, chloroplastic OS=Ceratophyllum demersum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 6.066e-12
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249

HSP 2 Score: 40.0466 bits (92), Expect = 6.066e-12
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+ KY+D+LIL
Sbjct:  242 KKPATPWGYPALGRRSRKRKKYSDSLIL 269

The following BLAST results are available for this feature:

BLAST of CF831928 vs. ExPASy Swiss-Prot

BLAST of CF831928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70


Match Name	E-value	Identity	Description
RK2_PEA	3.597e-12	63.89	50S ribosomal protein L2, chloroplastic OS=Pisum s...	[more]
RK2B_SOYBN	4.669e-12	60.00	50S ribosomal protein L2-B, chloroplastic OS=Glyci...	[more]
RK2A_SOYBN	4.669e-12	60.00	50S ribosomal protein L2-A, chloroplastic OS=Glyci...	[more]
RK2_LOTJA	4.669e-12	60.00	50S ribosomal protein L2, chloroplastic OS=Lotus j...	[more]
RK2_PIPCE	4.671e-12	60.00	50S ribosomal protein L2, chloroplastic OS=Piper c...	[more]
RK2_ACOCL	4.671e-12	60.00	50S ribosomal protein L2, chloroplastic OS=Acorus ...	[more]
RK2_ACOAM	4.671e-12	60.00	50S ribosomal protein L2, chloroplastic OS=Acorus ...	[more]
RK2_PHAVU	6.063e-12	60.00	50S ribosomal protein L2, chloroplastic OS=Phaseol...	[more]
RK2_PHAAN	6.063e-12	60.00	50S ribosomal protein L2, chloroplastic OS=Phaseol...	[more]
RK2_CERDE	6.066e-12	60.00	50S ribosomal protein L2, chloroplastic OS=Ceratop...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS02_01A11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF831928 ID=CF831928; Name=CF831928; organism=Citrus sinensis; type=EST; length=852bp
GCCCCTTTAGACTATGTCATGTGCATTAAAATTTCGATTTTCTCTCCTAT
TTAATACCGTTGAAAAGAATTAAATTATCATTATATTTATTCTTTTTCCT
GCTTCGTCTTCAAAGTGCAAGATAACCCCAAAGGGGTTGAGGCCTTTTTT
CTACAAATCGATACCCTTCCTTTACCACCCCAATGGAGGTAGTCTATGGA
ATTCATAACTACTCCTCTTACAGCAGGATTCTTGAACCAACAATCAGTTC
AAGAAATTAAAAAAAAGGCAGACCTGAAATAAGAATAGAACTCTCAAGTT
TTGCTTCAAAATATAAATAAGTGAAAACCATAGATTTCAGATTTATTAAT
GAAAGCTATGAGAAAGTTTGGTTTTACACCAGTGCATTATTTAGAGGGTT
CAATGAATGATGATACCCCTCTGTTAATATTGTTGTTACTCTGCAGCTGG
TTTGCTAGTCTCATCCTTGCATCTAGGTTGATGATTGTGATTTTTCAACT
CATCTCCAGCCACAAGAAAGAATGCAGTGTGTCTGAAAAAATTCATCATT
TTGATTTTTGAGTCAGCATCAATTTCTGGGGTACTGTCTAGTGCAATCTG
CATATGATGTAACCATCTCTCTGCAGCTTGATGTGTTACTGGGAATGGTC
GATGACGTCCAATTAATGCAGGATGGCCTTTCCTCTGAGAATACAGAGGA
GGCCCTCCCATTCTCTGCACAAAAAACTCATATTGGTTCTGAATTGCTTC
TTCTTTATTCGAATTTGCAAAAATTGACCTAAACCACTCTTCCTCGTCGT
CATAAACCCTGGTATAGAAGTTGGTGGAGAGATTGATGAAAGTTTGAAGG
CC