CF831928 | Citrus Genome Database

Overview


Name	CF831928
Unique Name	CF831928
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	852

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6872	contig	Csv1_Contig6872:177..1028.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_SACOF (50S ribosomal protein L2, chloroplastic OS=Saccharum officinarum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 8.251e-11
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+G+  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWG 249

HSP 2 Score: 37.3502 bits (85), Expect = 8.251e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RR+RK+ KY+D+ IL
Sbjct:  242 KKPTTPWGYPALGRRTRKRKKYSDSFIL 269

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_SACHY (50S ribosomal protein L2, chloroplastic OS=Saccharum hybrid GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 8.251e-11
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+G+  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWG 249

HSP 2 Score: 37.3502 bits (85), Expect = 8.251e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RR+RK+ KY+D+ IL
Sbjct:  242 KKPTTPWGYPALGRRTRKRKKYSDSFIL 269

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_ORYSJ (50S ribosomal protein L2, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 8.251e-11
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+G+  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWG 249

HSP 2 Score: 37.3502 bits (85), Expect = 8.251e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RR+RK+ KY+D+ IL
Sbjct:  242 KKPTTPWGYPALGRRTRKRKKYSDSFIL 269

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_ORYSI (50S ribosomal protein L2, chloroplastic OS=Oryza sativa subsp. indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 8.251e-11
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+G+  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWG 249

HSP 2 Score: 37.3502 bits (85), Expect = 8.251e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RR+RK+ KY+D+ IL
Sbjct:  242 KKPTTPWGYPALGRRTRKRKKYSDSFIL 269

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_ORYSA (50S ribosomal protein L2, chloroplastic OS=Oryza sativa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 8.251e-11
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+G+  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWG 249

HSP 2 Score: 37.3502 bits (85), Expect = 8.251e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RR+RK+ KY+D+ IL
Sbjct:  242 KKPTTPWGYPALGRRTRKRKKYSDSFIL 269

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_ORYNI (50S ribosomal protein L2, chloroplastic OS=Oryza nivara GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 8.251e-11
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+G+  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWG 249

HSP 2 Score: 37.3502 bits (85), Expect = 8.251e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RR+RK+ KY+D+ IL
Sbjct:  242 KKPTTPWGYPALGRRTRKRKKYSDSFIL 269

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_MAIZE (50S ribosomal protein L2, chloroplastic OS=Zea mays GN=rpl2-A PE=2 SV=2)

HSP 1 Score: 50.447 bits (119), Expect = 8.251e-11
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+G+  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWG 249

HSP 2 Score: 37.3502 bits (85), Expect = 8.251e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RR+RK+ KY+D+ IL
Sbjct:  242 KKPTTPWGYPALGRRTRKRKKYSDSFIL 269

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_LOLPR (50S ribosomal protein L2, chloroplastic OS=Lolium perenne GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 8.251e-11
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+G+  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWG 249

HSP 2 Score: 37.3502 bits (85), Expect = 8.251e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RR+RK+ KY+D+ IL
Sbjct:  242 KKPTTPWGYPALGRRTRKRKKYSDSFIL 269

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_HORVU (50S ribosomal protein L2, chloroplastic OS=Hordeum vulgare GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 8.251e-11
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+G+  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWG 249

HSP 2 Score: 37.3502 bits (85), Expect = 8.251e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RR+RK+ KY+D+ IL
Sbjct:  242 KKPTTPWGYPALGRRTRKRKKYSDSFIL 269

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_AGRST (50S ribosomal protein L2, chloroplastic OS=Agrostis stolonifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 8.251e-11
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+G+  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWG 249

HSP 2 Score: 37.3502 bits (85), Expect = 8.251e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RR+RK+ KY+D+ IL
Sbjct:  242 KKPTTPWGYPALGRRTRKRKKYSDSFIL 269

The following BLAST results are available for this feature:

BLAST of CF831928 vs. ExPASy Swiss-Prot

BLAST of CF831928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70


Match Name	E-value	Identity	Description
RK2_SACOF	8.251e-11	57.50	50S ribosomal protein L2, chloroplastic OS=Sacchar...	[more]
RK2_SACHY	8.251e-11	57.50	50S ribosomal protein L2, chloroplastic OS=Sacchar...	[more]
RK2_ORYSJ	8.251e-11	57.50	50S ribosomal protein L2, chloroplastic OS=Oryza s...	[more]
RK2_ORYSI	8.251e-11	57.50	50S ribosomal protein L2, chloroplastic OS=Oryza s...	[more]
RK2_ORYSA	8.251e-11	57.50	50S ribosomal protein L2, chloroplastic OS=Oryza s...	[more]
RK2_ORYNI	8.251e-11	57.50	50S ribosomal protein L2, chloroplastic OS=Oryza n...	[more]
RK2_MAIZE	8.251e-11	57.50	50S ribosomal protein L2, chloroplastic OS=Zea may...	[more]
RK2_LOLPR	8.251e-11	57.50	50S ribosomal protein L2, chloroplastic OS=Lolium ...	[more]
RK2_HORVU	8.251e-11	57.50	50S ribosomal protein L2, chloroplastic OS=Hordeum...	[more]
RK2_AGRST	8.251e-11	57.50	50S ribosomal protein L2, chloroplastic OS=Agrosti...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS02_01A11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF831928 ID=CF831928; Name=CF831928; organism=Citrus sinensis; type=EST; length=852bp
GCCCCTTTAGACTATGTCATGTGCATTAAAATTTCGATTTTCTCTCCTAT
TTAATACCGTTGAAAAGAATTAAATTATCATTATATTTATTCTTTTTCCT
GCTTCGTCTTCAAAGTGCAAGATAACCCCAAAGGGGTTGAGGCCTTTTTT
CTACAAATCGATACCCTTCCTTTACCACCCCAATGGAGGTAGTCTATGGA
ATTCATAACTACTCCTCTTACAGCAGGATTCTTGAACCAACAATCAGTTC
AAGAAATTAAAAAAAAGGCAGACCTGAAATAAGAATAGAACTCTCAAGTT
TTGCTTCAAAATATAAATAAGTGAAAACCATAGATTTCAGATTTATTAAT
GAAAGCTATGAGAAAGTTTGGTTTTACACCAGTGCATTATTTAGAGGGTT
CAATGAATGATGATACCCCTCTGTTAATATTGTTGTTACTCTGCAGCTGG
TTTGCTAGTCTCATCCTTGCATCTAGGTTGATGATTGTGATTTTTCAACT
CATCTCCAGCCACAAGAAAGAATGCAGTGTGTCTGAAAAAATTCATCATT
TTGATTTTTGAGTCAGCATCAATTTCTGGGGTACTGTCTAGTGCAATCTG
CATATGATGTAACCATCTCTCTGCAGCTTGATGTGTTACTGGGAATGGTC
GATGACGTCCAATTAATGCAGGATGGCCTTTCCTCTGAGAATACAGAGGA
GGCCCTCCCATTCTCTGCACAAAAAACTCATATTGGTTCTGAATTGCTTC
TTCTTTATTCGAATTTGCAAAAATTGACCTAAACCACTCTTCCTCGTCGT
CATAAACCCTGGTATAGAAGTTGGTGGAGAGATTGATGAAAGTTTGAAGG
CC