CF831929

Overview
NameCF831929
Unique NameCF831929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:94..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.083e-48
Identity = 85/119 (71.43%), Postives = 102/119 (85.71%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP +HFD+A P FL+IAQYRAGIVP+S+RRVPC K+GGIRFT+NGH YFNLVLITNV GAGD+   S+KGS+TGW ++SRNWGQNWQSN+ L GQ+LSF++T SD RT TS N+VP NW
Sbjct:  126 PPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNW 244          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.452e-47
Identity = 84/125 (67.20%), Postives = 107/125 (85.60%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG------WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP +HFD+AEPAFL+IA++ AGIVP+SFRRV CA+KGG+RFTVNGH+YFNLVL+TNVGGAGDV S+++KGS +G      WQ MSRNWGQNWQSN+YL+G++LSF++TA DGR++T  +V P  W
Sbjct:  124 PPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGW 248          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.452e-47
Identity = 83/119 (69.75%), Postives = 100/119 (84.03%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP  HFD+++P + +IA Y++GI+P+ +RRV C + GGIRFT+NGHSYFNLVL+TNVGGAGDVHSVS+KGS+T WQ MSRNWGQNWQSNSYLNGQSLSF +T SD R+V S NV P  W
Sbjct:  124 PPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTW 242          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.815e-47
Identity = 84/119 (70.59%), Postives = 99/119 (83.19%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP  HFD+A P FL+IA+YRAGIVPIS+RRV C K GGIRFT+NGH YFNLVLITNV GAGD+   S+KGSKTGW +++RNWGQNWQSN+ L GQSLSF++T+SD RT TS N+ P NW
Sbjct:  129 PPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNW 247          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.210e-46
Identity = 82/119 (68.91%), Postives = 98/119 (82.35%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP +HFD+A P FL IA+Y+AGIVP+S+RR+PC KKGGIRFT+NG  YFNLVL+TNV GAGDV  VS+KGS T W  +SRNWGQNWQSN+ L GQSLSF++  SDGR+ TSNN+ P NW
Sbjct:  127 PPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNW 245          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 8.396e-46
Identity = 80/119 (67.23%), Postives = 100/119 (84.03%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP QHFDMAEPA+L+I  Y  GIVP+ ++RVPCAK+GG+RFT+NG  YF LVL++NVGG G + SVSIKGS+TGW AMSRNWG NWQSN+YL+GQSLSF++T+SDG+T+T  +V P  W
Sbjct:  130 PPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGW 248          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.443e-45
Identity = 80/120 (66.67%), Postives = 101/120 (84.17%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP  HFDM++P F +IA ++AGIVP+S+RRV C KKGGIRFT+NGHSYFNLVL+TNVGGAGDVH+V++K  ++  WQA+SRNWGQNWQS + L+GQ+LSF++T  DGR+V SNN VP  W
Sbjct:  160 PPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGW 279          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.191e-45
Identity = 84/119 (70.59%), Postives = 97/119 (81.51%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP +HFD+A P FL+I  YRAGIVP+S+RRVPC K GGIRFTVNG  YFNLVL+TNV GAGD++ VS+KGSKT W  MSRNWGQNWQSN+ L GQSLSF++TASD R+ TS NV P  W
Sbjct:  131 PPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATW 249          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.167e-45
Identity = 82/119 (68.91%), Postives = 94/119 (78.99%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP  HFD+A P FL IA+YRAGIVP+S+RRVPC KKGG+RFT+NG  YFNLVLITNV GAGD+   S+KG+ TGW  MSRNWGQNWQSNS L GQ+LSF++T SD RT TS N  P  W
Sbjct:  133 PPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGW 251          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.212e-44
Identity = 80/119 (67.23%), Postives = 97/119 (81.51%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP  HFD+A P FL+IA+YRAGIVP+SFRRVPC K+GGIRFT+NG  YFNLVL+TNV GAG++  + +KG+ T W  MSRNWGQNWQSNS L GQSLSF++T+SD R+ TS N+ P NW
Sbjct:  126 PPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANW 244          
The following BLAST results are available for this feature:
BLAST of CF831929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXPA4_ARATH3.083e-4871.43Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA6_ORYSJ4.452e-4767.20Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ARATH4.452e-4769.75Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP16_ARATH5.815e-4770.59Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA9_ARATH2.210e-4668.91Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA1_ORYSJ8.396e-4667.23Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ORYSJ2.443e-4566.67Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ARATH3.191e-4570.59Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA7_ORYSJ4.167e-4568.91Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ARATH1.212e-4467.23Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831929 ID=CF831929; Name=CF831929; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTGAACGATTTATACCCGTTCATTCAATTGAAGTAATAACTATA
TATCGTACACAATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGA
CCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACCTA
CCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTAAA
TATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTCAA
AGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCACA
GTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTTAAG
ATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCC
ATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCT
CCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGT
AAACCTTATTCCTCCTTTCTTCGCACACGGGACCCTTCTGAAGGAAATTG
GGACGATACCGGCGCGGTATTGGGCAATTTGCAAGAAAGCGGGCTCAGCC
ATGTCAAAGTGCTGGAGGGGAGGAT
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