CF831929

Overview
NameCF831929
Unique NameCF831929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:94..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.292e-35
Identity = 63/119 (52.94%), Postives = 89/119 (74.79%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP +HFD++   FL+IA+Y+AG+VP+ +RR+PC+K GG++F   G+ YF +VLI NVGGAGD+  V +K +KTGW  M +NWGQNW +++ L GQ LSF++T +DG T    NV+P NW
Sbjct:  149 PPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNW 267          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.292e-35
Identity = 66/119 (55.46%), Postives = 90/119 (75.63%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP  HFDMAEPA+LQI  Y+AGIVP+ ++RVPC K+GG+RFT+ G +YF LVLI+NV G+G + SV +KG  T    +SRNWG NWQS++ L GQ+L+F +T++ G+T+   N+VP  W
Sbjct:  128 PPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWW 246          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.106e-35
Identity = 64/120 (53.33%), Postives = 94/120 (78.33%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTA-SDGRTVTSNNVVPGNW 623
            PP  HFDMA+PAF+++A +RAGI+P+++RRVPC + GG+RF   G+SY+ L+ + NVGGAGD+ S+++KGS+T W +MS NWG ++Q+ S L GQSLSF++T+ + G T+ + NV P NW
Sbjct:  130 PPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANW 249          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.486e-34
Identity = 67/119 (56.30%), Postives = 88/119 (73.95%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP  HF +   +F +IA ++AG++PI +RRV C + GG+RF V G S+F  VLI+NVGGAGDV SV IKG+++GW +M RNWGQ W  NS   GQ LSF+LT+SDG+T+T+ NVVP  W
Sbjct:  126 PPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEW 244          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.145e-33
Identity = 63/119 (52.94%), Postives = 86/119 (72.27%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP +HFDM++PA+ +I  YRAGIVP+ +RRV C ++GG+RFTV G  +F LVL+ NV G+G V +VS++G+ TGW  MSRNWG NWQS + L GQ LSF +T + G+ +   +V P  W
Sbjct:  123 PPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGW 241          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.802e-33
Identity = 62/119 (52.10%), Postives = 87/119 (73.11%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP +HFD+++P FL+IA+Y+AG+VP+ FRRVPCAK GG++F + G+ +F ++L  NVGGAG V ++ IKG++T W AM +NWGQ W +   L GQ LSF+LT SDG      +V P +W
Sbjct:  181 PPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDW 299          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 8.151e-33
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP  HFDM++PA+ QI  Y+AGIVP+ ++RV C ++GG+RFTV G +YF LVLITNV G+G V S  IKG+ TGW  MSRNWG NWQS + L GQ+LSF +T + G+ +   +V P  W
Sbjct:  124 PPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWW 242          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.065e-32
Identity = 61/115 (53.04%), Postives = 86/115 (74.78%), Query Frame = -3
Query:  267 HFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 611
            HFDM++PA+  I  Y AGIVPI +++V C + GG+RFT+ G +YF LVL+TN+ G+G + S+S+KGS TGW  MSRNWG NWQ  + L GQ+LSF +T++ G+T+  ++VVP  W
Sbjct:  121 HFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGW 235          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.065e-32
Identity = 63/118 (53.39%), Postives = 86/118 (72.88%), Query Frame = -3
Query:  267 PLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 620
            P +HF+M+E AFL++A+ +A IVP+ FRRV C + GG+RFT+ G + F  VLITNV   G+V +V +KGS+TGW  M RNWGQNWQ ++ L GQ LSF++T   GRTV + +V P +W
Sbjct:  130 PKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDW 247          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.390e-32
Identity = 65/119 (54.62%), Postives = 86/119 (72.27%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP +HF +   AF +IA ++AG +P+ +RR+ C K+G +RFTV+G   F  VLITNV G+GD+ +V IKGS+TGW  M RNWGQNW  N+ L  Q+LSF++T+SD  TVTS NV P NW
Sbjct:  134 PPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNW 252          
The following BLAST results are available for this feature:
BLAST of CF831929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP26_ARATH2.292e-3552.94Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP15_ORYSJ2.292e-3555.46Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA7_ARATH5.106e-3553.33Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP10_ORYSJ1.486e-3456.30Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ2.145e-3352.94Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP24_ARATH2.802e-3352.10Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP31_ORYSJ8.151e-3355.46Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ORYSJ1.065e-3253.04Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ1.065e-3253.39Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH1.390e-3254.62Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831929 ID=CF831929; Name=CF831929; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTGAACGATTTATACCCGTTCATTCAATTGAAGTAATAACTATA
TATCGTACACAATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGA
CCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACCTA
CCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTAAA
TATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTCAA
AGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCACA
GTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTTAAG
ATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCC
ATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCT
CCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGT
AAACCTTATTCCTCCTTTCTTCGCACACGGGACCCTTCTGAAGGAAATTG
GGACGATACCGGCGCGGTATTGGGCAATTTGCAAGAAAGCGGGCTCAGCC
ATGTCAAAGTGCTGGAGGGGAGGAT
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