CF831931

Overview
NameCF831931
Unique NameCF831931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:93..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831931 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.808e-61
Identity = 103/145 (71.03%), Postives = 124/145 (85.52%), Query Frame = -2
Query:  268 GSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 702
            G++ VTATN CPPN AL+ D GGWCNPP  HFDMAEPAF +IAQ RAG+VP+ +RR+ CAK+GGIRFT+ GHSYFNLVL+TNVGGAGDV +VS+KGS++GWQAMS NWG NWQ+ + L+GQ LSF++TASDGRTVTS+NV P  W
Sbjct:   93 GTVAVTATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGW 237          
BLAST of CF831931 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.871e-61
Identity = 103/144 (71.53%), Postives = 121/144 (84.03%), Query Frame = -2
Query:  268 SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 699
            S+ VTATNFCPPNLA  +DNGGWCNPP  HFD+A P FL+IA+YRAGIVPIS+RR+ C K GGIRFT+NGH YFNLVLITNV GAGD+   S+KGSKTGW +++RNWGQNWQSN+ L GQSLSF++T+SD RT TS N+ P NW
Sbjct:  104 SVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNW 247          
BLAST of CF831931 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.817e-60
Identity = 101/150 (67.33%), Postives = 128/150 (85.33%), Query Frame = -2
Query:  268 SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG------WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 699
            ++ VTATNFCPPN AL +D GGWCNPP +HFD+AEPAFL+IA++ AGIVP+SFRR+ CA+KGG+RFTVNGH+YFNLVL+TNVGGAGDV S+++KGS +G      WQ MSRNWGQNWQSN+YL+G++LSF++TA DGR++T  +V P  W
Sbjct:   99 TVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGW 248          
BLAST of CF831931 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.597e-60
Identity = 101/144 (70.14%), Postives = 120/144 (83.33%), Query Frame = -2
Query:  268 SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 699
            SI++TATNFCPPN   ++DNGGWCNPP +HFD+A P FL IA+Y+AGIVP+S+RRIPC KKGGIRFT+NG  YFNLVL+TNV GAGDV  VS+KGS T W  +SRNWGQNWQSN+ L GQSLSF++  SDGR+ TSNN+ P NW
Sbjct:  102 SILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNW 245          
BLAST of CF831931 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.296e-59
Identity = 99/146 (67.81%), Postives = 125/146 (85.62%), Query Frame = -2
Query:  268 GSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 702
            GS++VTATNFCPPN AL +D+GGWCNPP  HFDM++P F +IA ++AGIVP+S+RR+ C KKGGIRFT+NGHSYFNLVL+TNVGGAGDVH+V++K  ++  WQA+SRNWGQNWQS + L+GQ+LSF++T  DGR+V SNN VP  W
Sbjct:  134 GSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGW 279          
BLAST of CF831931 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.210e-59
Identity = 101/144 (70.14%), Postives = 117/144 (81.25%), Query Frame = -2
Query:  268 SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 699
            SI++TATNFCPPN AL +DNGGWCNPP  HFD+A P FL IA+YRAGIVP+S+RR+PC KKGG+RFT+NG  YFNLVLITNV GAGD+   S+KG+ TGW  MSRNWGQNWQSNS L GQ+LSF++T SD RT TS N  P  W
Sbjct:  108 SILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGW 251          
BLAST of CF831931 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.433e-58
Identity = 97/144 (67.36%), Postives = 120/144 (83.33%), Query Frame = -2
Query:  268 SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 699
            S+ +TATN CPPN AL ND GGWCNPP QHFDMAEPA+L+I  Y  GIVP+ ++R+PCAK+GG+RFT+NG  YF LVL++NVGG G + SVSIKGS+TGW AMSRNWG NWQSN+YL+GQSLSF++T+SDG+T+T  +V P  W
Sbjct:  105 SVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGW 248          
BLAST of CF831931 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.871e-58
Identity = 102/144 (70.83%), Postives = 119/144 (82.64%), Query Frame = -2
Query:  268 SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 699
            SI+VTATNFCPPN A  +D+GGWCNPP +HFD+A P FL+I  YRAGIVP+S+RR+PC K GGIRFTVNG  YFNLVL+TNV GAGD++ VS+KGSKT W  MSRNWGQNWQSN+ L GQSLSF++TASD R+ TS NV P  W
Sbjct:  106 SILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATW 249          
BLAST of CF831931 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.168e-58
Identity = 98/144 (68.06%), Postives = 118/144 (81.94%), Query Frame = -2
Query:  268 SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 699
            SI +TATNFCPPN A  +DNGGWCNPP  HFD+A P FL+IA+YRAGIVP+SFRR+PC K+GGIRFT+NG  YFNLVL+TNV GAG++  + +KG+ T W  MSRNWGQNWQSNS L GQSLSF++T+SD R+ TS N+ P NW
Sbjct:  101 SIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANW 244          
BLAST of CF831931 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.529e-57
Identity = 97/144 (67.36%), Postives = 117/144 (81.25%), Query Frame = -2
Query:  268 SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 699
            S+++TATNFCPPN AL N+NGGWCNPPL+HFDMA+PA+ +I  YR GIVP+ F+R+ C KKGG+RF +NG  YF LV I NVGGAG + SVSIKGSKTGW AMSRNWG NWQSN+YL+GQ+LSF +T +DG T    NVVP +W
Sbjct:   97 SVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSW 240          
The following BLAST results are available for this feature:
BLAST of CF831931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EXP11_ORYSJ1.808e-6171.03Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ARATH6.871e-6171.53Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA6_ORYSJ5.817e-6067.33Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA9_ARATH7.597e-6070.14Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA5_ORYSJ1.296e-5967.81Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA7_ORYSJ2.210e-5970.14Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ORYSJ1.433e-5867.36Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ARATH1.871e-5870.83Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA6_ARATH4.168e-5868.06Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXP11_ARATH3.529e-5767.36Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01A12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831931 ID=CF831931; Name=CF831931; organism=Citrus sinensis; type=EST; length=703bp
TTTTTTTTGAACGATATTATACCCGTTCATTCAATTGAAGTAATAACTAT
ATATCTAACACAATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAG
ACCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACCT
ACCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTAA
ATATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTCA
AAGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCAC
AGTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTTAA
GATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGC
CATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCC
TCCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGG
TAAACCTTATTCCTCCTTTCTTCGCACACGGGATCCTTCTGAAGGAAATT
GGGACGATACCGGCGCGGTATTGGGCAATTTGCAAGAAAGCGGGCTCAGC
CATGTCAAAGTGCTGGAGGGGAGGATTGCACCAACCGCCGTTGTCGTTAG
ACAGGGCAAGGTTAGGTGGGCAGAAGTTGGTGGCGGTGACAATGATGGAG
CCG
back to top