CF832020

Overview
NameCF832020
Unique NameCF832020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6288 contig Csv1_Contig6288:778..1617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832020 vs. ExPASy Swiss-Prot
Match: PDIA6_MESAU (Protein disulfide-isomerase A6 OS=Mesocricetus auratus GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 41/121 (33.88%), Postives = 58/121 (47.93%), Query Frame = -2
Query:  378 DSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV----DFIENNRDKAAPKETVKEESGK 722
            D+    V +S    ++EFYAPWCGHCK L P     A  V  Q    V +A  DAT N +  + + ++G+PT+         V Y+G RT+ DIV    D   +N       E + E+  K
Sbjct:  168 DTFDKNVLDSDDVWMVEFYAPWCGHCKNLEPEWATAATEVKEQTKGKVKLAAVDATVNQVLANRYGIRGFPTIKIFQKGEAPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDVAK 288          
BLAST of CF832020 vs. ExPASy Swiss-Prot
Match: PDILT_MACFA (Protein disulfide-isomerase-like protein of the testis OS=Macaca fascicularis GN=PDILT PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.647e-12
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = -2
Query:  429 MVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFR---SASGKTVPYEGDRTKEDIVDFIEN 707
            +VF+  K+V + FYAPW   CK L P+L+E+   YQN + ++IAK D TANDI      +  YP  FFR   + S + V Y+G+ T +   DF+E+
Sbjct:  400 VVFDKEKDVFVMFYAPWSKKCKMLFPLLEELGRKYQNHSTIIIAKIDITANDI--QLVYLDRYP--FFRLFPTDSQQAVLYKGEHTLKGFSDFLES 491          
BLAST of CF832020 vs. ExPASy Swiss-Prot
Match: PDIA6_RAT (Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.647e-12
Identity = 41/121 (33.88%), Postives = 57/121 (47.11%), Query Frame = -2
Query:  378 DSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV----DFIENNRDKAAPKETVKEESGK 722
            D+    V +S    ++EFYAPWCGHCK L P     A  V  Q    V +A  DAT N +    + ++G+PT+         V Y+G RT+ DIV    D   +N       E + E+  K
Sbjct:  168 DTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAK 288          
BLAST of CF832020 vs. ExPASy Swiss-Prot
Match: PDIA6_MOUSE (Protein disulfide-isomerase A6 OS=Mus musculus GN=Pdia6 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.647e-12
Identity = 41/121 (33.88%), Postives = 57/121 (47.11%), Query Frame = -2
Query:  378 DSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV----DFIENNRDKAAPKETVKEESGK 722
            D+    V +S    ++EFYAPWCGHCK L P     A  V  Q    V +A  DAT N +    + ++G+PT+         V Y+G RT+ DIV    D   +N       E + E+  K
Sbjct:  168 DTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAK 288          
BLAST of CF832020 vs. ExPASy Swiss-Prot
Match: TMX3_PONAB (Protein disulfide-isomerase TMX3 OS=Pongo abelii GN=TMX3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.927e-12
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = -2
Query:  438 LLEFYAPWCGHCKKLAPILDEVAVSYQN-DADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDF 680
            L++FYAPWCGHCKKL PI +EV +  ++  + V + K DAT+       F V+GYPT+           + G RTK+DI++F
Sbjct:   45 LVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKGD-LAYNHRGPRTKDDIIEF 125          
BLAST of CF832020 vs. ExPASy Swiss-Prot
Match: PDIA5_RAT (Protein disulfide-isomerase A5 OS=Rattus norvegicus GN=Pdia5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 43/153 (28.10%), Postives = 73/153 (47.71%), Query Frame = -2
Query:  387 ADQIAPWVKEYKEGKVPPFRKSXXXXXXXXXXXXXXVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADV--VIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKETVKEE 836
            A+ I  W+K  +    PP  +               + D   D       +VL+ F+APWCGHCKK+ P  +  A     DA+   V+A  DAT N+   + F +  +PT+ +F++   + VP    RTK+  +++++N      P+ T +E+
Sbjct:  247 AEDIVEWLKNPQ----PPQPQVPETPWADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFESAAEVLHGDAESSGVLAAVDATINEALAERFHISAFPTLKYFKNGEQQAVP--ALRTKKKFIEWMQNPEAPPPPEPTWEEQ 393          
BLAST of CF832020 vs. ExPASy Swiss-Prot
Match: PDIA5_MOUSE (Protein disulfide-isomerase A5 OS=Mus musculus GN=Pdia5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 43/153 (28.10%), Postives = 72/153 (47.06%), Query Frame = -2
Query:  387 ADQIAPWVKEYKEGKVPPFRKSXXXXXXXXXXXXXXVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADV--VIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKETVKEE 836
            A+ I  W+K      +PP  +               + D   D       +VL+ F+APWCGHCKK+ P  +  A     DA+   V+A  DAT N+     F +  +PT+ +F++   + VP    RTK+  +++++N      P+ T +E+
Sbjct:  247 AEDIVEWLKN----PLPPQPQVPETPWADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFESAAEVLHGDAESSGVLAAVDATVNEALAGRFHISAFPTLKYFKNGEQQAVP--ALRTKKKFIEWMQNPEAPPPPEPTWEEQ 393          
BLAST of CF832020 vs. ExPASy Swiss-Prot
Match: TXND5_MOUSE (Thioredoxin domain-containing protein 5 OS=Mus musculus GN=Txndc5 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.766e-11
Identity = 34/99 (34.34%), Postives = 56/99 (56.57%), Query Frame = -2
Query:  393 NVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN-RDKAAPKETVK 686
            N  ++F+APWCGHCK LAP  +++A+  ++   V I K D T +       +V+GYPT+ +     K   Y+G R  E + D++++  +   A  ETV+
Sbjct:  193 NHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYAVCSEHQVRGYPTLLWFRDGKKVDQYKGKRDLESLRDYVQSQLQGSEAAPETVE 291          
BLAST of CF832020 vs. ExPASy Swiss-Prot
Match: PDIA6_CAEEL (Probable protein disulfide-isomerase A6 OS=Caenorhabditis elegans GN=tag-320 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.306e-11
Identity = 42/123 (34.15%), Postives = 56/123 (45.53%), Query Frame = -2
Query:  354 SLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKETVKEESGKDEL*EGMG 719
            + Q  V NS    ++EFYAPWCGHCK L P   + A + +  A V     D T +   G  + VQG+PT+  F +   K   Y G RT + I D +     KA       + SG      G G
Sbjct:   33 NFQSKVINSDDIWIVEFYAPWCGHCKSLVPEYKKAASALKGVAKV--GAVDMTQHQSVGGPYNVQGFPTLKIFGADKKKPTDYNGQRTAQAIADSVLAEAKKAVSARLGGKSSGSSSSGSGSG 153          
BLAST of CF832020 vs. ExPASy Swiss-Prot
Match: PDIA5_HUMAN (Protein disulfide-isomerase A5 OS=Homo sapiens GN=PDIA5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.138e-11
Identity = 43/153 (28.10%), Postives = 73/153 (47.71%), Query Frame = -2
Query:  387 ADQIAPWVKEYKEGKVPPFRKSXXXXXXXXXXXXXXVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADV--VIAKFDATANDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKETVKEE 836
            A+ I  W+K  +    PP  +               + D   D       +VL+ F+APWCGHCKK+ P  ++ A +   +AD   V+A  DAT N    + F +  +PT+ +F++     VP    RTK+  +++++N      P+ T +E+
Sbjct:  249 AEDIVEWLKNPQ----PPQPQVPETPWADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVNKALAERFHISEFPTLKYFKNGEKYAVPVL--RTKKKFLEWMQNPEAPPPPEPTWEEQ 395          
The following BLAST results are available for this feature:
BLAST of CF832020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PDIA6_MESAU3.558e-1233.88Protein disulfide-isomerase A6 OS=Mesocricetus aur... [more]
PDILT_MACFA4.647e-1241.67Protein disulfide-isomerase-like protein of the te... [more]
PDIA6_RAT4.647e-1233.88Protein disulfide-isomerase A6 OS=Rattus norvegicu... [more]
PDIA6_MOUSE4.647e-1233.88Protein disulfide-isomerase A6 OS=Mus musculus GN=... [more]
TMX3_PONAB7.927e-1242.68Protein disulfide-isomerase TMX3 OS=Pongo abelii G... [more]
PDIA5_RAT1.352e-1128.10Protein disulfide-isomerase A5 OS=Rattus norvegicu... [more]
PDIA5_MOUSE1.352e-1128.10Protein disulfide-isomerase A5 OS=Mus musculus GN=... [more]
TXND5_MOUSE1.766e-1134.34Thioredoxin domain-containing protein 5 OS=Mus mus... [more]
PDIA6_CAEEL2.306e-1134.15Probable protein disulfide-isomerase A6 OS=Caenorh... [more]
PDIA5_HUMAN5.138e-1128.10Protein disulfide-isomerase A5 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832020 ID=CF832020; Name=CF832020; organism=Citrus sinensis; type=EST; length=840bp
TTTTTTTTTTTTTTGGACGTAATAAGCAAAATCCGAAATAATTAACGCAT
TAAATTAAAATTATCCATTACGGATTTAACACGCAGTAAGTTACTCCTAG
GCCGAAAATACTAATATCACAACTATGCGAATACCAAAAAGTACTGCAGC
TACAAATGCCAAAAATGCCTCCCCATTTTATTCACGGGAACAGAACAGAT
CTGTAAAGGGAAATGGCCTCAGAAAAAGCTATAAGGGGGGATATAGGACA
AGGGGGAGGAGAACATCAGGCATTGTTTTGTCGACACTGATAGTTTTGGT
ATAACATCCGCCAAACACGCGCCAACCGACTATGTGCACGGCTCTCTAAA
CATACCCATTCCTTCTTAGAGCTCATCTTTTCCAGATTCCTCTTTTACAG
TTTCCTTGGGGGCAGCTTTGTCCCTGTTATTTTCAATGAAGTCAACAATA
TCTTCTTTGGTCCTATCCCCCTCATAGGGCACTGTCTTTCCACTAGCAGA
TCGGAAGAACACGGTTGGGTAACCTTGGACTTCAAAGGTGTCACCAGGAA
TATCATTTGCGGTTGCATCAAATTTTGCAATAACAACATCAGCATCATTT
TGATATGAGACAGCAACTTCATCCAAGATTGGAGCCAACTTTTTGCAGTG
TCCACACCAAGGAGCGTAAAACTCGAGCAAAACATTTTTTCCAGAGTTGA
AAACCATGTCCTGAAGGCTGTCAGCAACAACCACTTTCACAGGCTCGTTG
TTCTCTTCAGGGATAGGCTCAGACTTTCTGAATGGGGGAACCTTGCCTTC
CTTGTATTCCTTCACCCAAGGTGCAATCTGATCGGCATCC
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