CF832021

Overview
NameCF832021
Unique NameCF832021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6288 contig Csv1_Contig6288:132..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF832021 vs. ExPASy Swiss-Prot
Match: PDIA4_BOVIN (Protein disulfide-isomerase A4 OS=Bos taurus GN=PDIA4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 67/252 (26.59%), Postives = 124/252 (49.21%), Query Frame = 3 
Query:   15 IVEYLKKQSGPASAEIKSAEDASSFIGE-KKVVIIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQNAKLLPRGESSVTGPVVRLLKPFDELF------VDFKD-FKVDALEKFVEESSIPIVTVFN-SDANNH---PFVIKFFNSPNAKAMLFMNFSSE---GTEPIQSKYREVAEQYKGQGISFLLGDLEASQGAFQYFGLQES--QVPLIVIQTNDGQKYLKP-NLDADQIAPWVKEYKEGKVPPFRKS 716
            IV+Y+ +QSGP S +I + +    F+ +   V+IIGVF + S   ++ Y   A  LR DY+F HT + ++    + S+   VV   + F   +      +D KD  +  A+ + V + ++P+V     +DA  +   P V+ +++         ++FS +    T+  ++K  EVA+ +     +F + D E      +  GL ES  +V   ++     +  ++P + DAD +  +V  +K+GK+ P  KS
Sbjct:  274 IVDYMMEQSGPPSKQILALKQVQEFLKDGDDVIIIGVFKSESDPAYQLYQDAANSLREDYKFHHTFSTEIAKFLKVSLGKLVVMQPEKFQSKYEPKSYVMDIKDSTEAAAITEHVVKHTLPLVGHRKAADAKRYTRRPLVVVYYS---------VDFSFDYRAATQFWRNKVLEVAKDF--PEYTFAVADEEDFATELKDLGLSESGEEVNAAILDEGGRRFAMEPDDFDADALRDFVTAFKKGKLKPVIKS 514
The following BLAST results are available for this feature:
BLAST of CF832021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PDIA4_BOVIN3.901e-1126.59Protein disulfide-isomerase A4 OS=Bos taurus GN=PD... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832021 ID=CF832021; Name=CF832021; organism=Citrus sinensis; type=EST; length=716bp
GCGAGGCCGATCGTATCGTTGAATATTTGAAGAAACAAAGTGGTCCTGCT
TCTGCTGAAATTAAGTCGGCGGAAGATGCTAGTAGTTTCATCGGTGAGAA
GAAAGTGGTCATTATTGGTGTGTTTCCAAATTTCTCTGGAGAGGAGTTTG
AGAACTACACGGCTCTTGCTGAGAAATTGCGTTCTGATTATGAGTTTGGT
CACACTCAAAATGCCAAGCTCCTTCCACGTGGGGAGTCATCAGTGACTGG
GCCAGTAGTTAGATTGCTCAAGCCTTTTGATGAACTCTTTGTTGACTTTA
AGGACTTTAAAGTGGATGCTCTTGAGAAGTTTGTTGAAGAATCAAGCATT
CCTATAGTGACTGTCTTTAACAGTGATGCAAACAATCACCCATTTGTCAT
CAAATTCTTTAACAGTCCCAATGCAAAGGCTATGTTGTTTATGAACTTCA
GCAGCGAAGGAACTGAACCTATTCAATCAAAGTATCGTGAAGTTGCTGAA
CAATACAAAGGACAGGGCATTAGTTTTCTTTTGGGAGACCTTGAGGCTAG
TCAAGGTGCCTTCCAGTACTTTGGGCTACAAGAGAGCCAAGTACCTCTCA
TCGTCATTCAGACTAATGATGGGCAGAAGTATTTGAAGCCGAACTTGGAT
GCCGATCAGATTGCACCTTGGGTGAAGGAATACAAGGAAGGCAAGGTTCC
CCCATTCAGAAAGTCT
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