CF832022

Overview
NameCF832022
Unique NameCF832022
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6288 contig Csv1_Contig6288:764..1600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832022 vs. ExPASy Swiss-Prot
Match: PDI1_DICDI (Protein disulfide-isomerase 1 OS=Dictyostelium discoideum GN=pdi1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.218e-13
Identity = 40/98 (40.82%), Postives = 56/98 (57.14%), Query Frame = -1
Query:  418 SLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG--DTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFI 702
            +   +V +  KNVL+EFYAPWCGHCKKL P  + +  +Y N+ DVVIAK D  A D       + V G+PT+ +F   S     YE  R  +  +++I
Sbjct:  151 NFDSVVLDKSKNVLVEFYAPWCGHCKKLMPDYEILGNTYANEKDVVIAKIDCDAADNKAICSKYGVTGFPTLKWFGKQSKDGEKYEQGRDLDTFINYI 248          

HSP 2 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = -1
Query:  379 DMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDAD-VVIAKFDATANDIPG--DTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN-----RDKAAPKETV 693
            D V +  K V ++FYAPWCGHCKKLAP  + +A ++   ++ VVIAK D    D       ++V GYPT+     S     Y G R+ ++++ +I N+     + K AP   V
Sbjct:   33 DTVVDGSKTVFVKFYAPWCGHCKKLAPDFEILADTFAPVSNKVVIAKVDCDQADNKALCSKYDVSGYPTLKIFDKSTTAKDYNGARSVDELLTYINNHAKTNVKVKKAPSNVV 145          
BLAST of CF832022 vs. ExPASy Swiss-Prot
Match: PDILT_RAT (Protein disulfide-isomerase-like protein of the testis OS=Rattus norvegicus GN=Pdilt PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.490e-13
Identity = 40/97 (41.24%), Postives = 60/97 (61.86%), Query Frame = -1
Query:  409 MVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFR---SASGKTVPYEGDRTKEDIVDFIENN 690
            +VF+  K+V + FYAPW   C+ L P+L+E+ + YQN + V+IAK D TANDI       + YP  FFR   + S + V Y+G+ T +   DF+E++
Sbjct:  397 VVFDKEKDVFVMFYAPWSEKCRVLLPLLEELGIKYQNHSTVIIAKIDITANDI--QLANPEQYP--FFRLFPTDSQEAVMYKGEHTMKGFCDFLESH 489          
BLAST of CF832022 vs. ExPASy Swiss-Prot
Match: PDILT_HUMAN (Protein disulfide-isomerase-like protein of the testis OS=Homo sapiens GN=PDILT PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.490e-13
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = -1
Query:  409 MVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFR---SASGKTVPYEGDRTKEDIVDFIENN 690
            +VF+  K+V + FYAPW   CK L P+L+E+   YQN + ++IAK D TANDI      +  YP  FFR   S S + V Y+G+ T +   DF+E++
Sbjct:  400 VVFDKEKDVFVMFYAPWSKKCKMLFPLLEELGRKYQNHSTIIIAKIDVTANDI--QLMYLDRYP--FFRLFPSGSQQAVLYKGEHTLKGFSDFLESH 492          
BLAST of CF832022 vs. ExPASy Swiss-Prot
Match: TMX3_XENLA (Protein disulfide-isomerase TMX3 OS=Xenopus laevis GN=tmx3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = -1
Query:  421 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVV-IAKFDATANDIPGDTFEVQGYPTVFFRSASG-KTVPYEGDRTKEDIVDF 663
            L++FYAPWCGHCKKL P+ +EV +  +     + + K DAT        F V+G+PT+  ++  G     Y G RTKEDIV+F
Sbjct:   45 LVDFYAPWCGHCKKLEPVWNEVGIEIRTSGSPIRVGKIDATVYSSIASEFGVRGFPTI--KALKGDMAYNYRGPRTKEDIVEF 125          
BLAST of CF832022 vs. ExPASy Swiss-Prot
Match: TMX3_MOUSE (Protein disulfide-isomerase TMX3 OS=Mus musculus GN=Tmx3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = -1
Query:  421 LLEFYAPWCGHCKKLAPILDEVAVSYQN-DADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDF 663
            L++FYAPWCGHCKKL PI +EV +  ++  + V + K DAT+       F V+GYPT+           Y G RTK+DI++F
Sbjct:   48 LVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKGD-LAYNYRGPRTKDDIIEF 128          
BLAST of CF832022 vs. ExPASy Swiss-Prot
Match: TMX3_HUMAN (Protein disulfide-isomerase TMX3 OS=Homo sapiens GN=TMX3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = -1
Query:  421 LLEFYAPWCGHCKKLAPILDEVAVSYQN-DADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDF 663
            L++FYAPWCGHCKKL PI +EV +  ++  + V + K DAT+       F V+GYPT+           Y G RTK+DI++F
Sbjct:   45 LVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKGD-LAYNYRGPRTKDDIIEF 125          
BLAST of CF832022 vs. ExPASy Swiss-Prot
Match: PDIA6_PONAB (Protein disulfide-isomerase A6 OS=Pongo abelii GN=PDIA6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 42/121 (34.71%), Postives = 57/121 (47.11%), Query Frame = -1
Query:  361 DSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV----DFIENNRDKAAPKETVKEESGK 705
            DS    V +S    ++EFYAPWCGHCK L P     A  V  Q    V +A  DAT N +    + ++G+PT+         V Y+G RT+ DIV    D   +N       E + E+  K
Sbjct:  168 DSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIISEDIAK 288          
BLAST of CF832022 vs. ExPASy Swiss-Prot
Match: PDIA6_HUMAN (Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 42/121 (34.71%), Postives = 57/121 (47.11%), Query Frame = -1
Query:  361 DSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV----DFIENNRDKAAPKETVKEESGK 705
            DS    V +S    ++EFYAPWCGHCK L P     A  V  Q    V +A  DAT N +    + ++G+PT+         V Y+G RT+ DIV    D   +N       E + E+  K
Sbjct:  168 DSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLEIINEDIAK 288          
BLAST of CF832022 vs. ExPASy Swiss-Prot
Match: SEP2_EMIHU (Protein disulfide-isomerase-like protein EhSep2 OS=Emiliania huxleyi GN=SEP2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.725e-12
Identity = 35/100 (35.00%), Postives = 58/100 (58.00%), Query Frame = -1
Query:  412 DSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIP-GDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIEN 705
            D+  ++V  SGK   ++F APW GHCKK+ P  D +A ++++   V+IA  D T    P  + + V+GYPT+ +F     +   Y+G R+ +++  F EN
Sbjct:   25 DNFDELVLKSGKAAFIKFLAPWUGHCKKMKPDWDSLASTFEDSKKVLIADVDCTTGGKPLCEKYGVRGYPTIKYFNPPDEEGEDYKGGRSLDELKKFAEN 124          
BLAST of CF832022 vs. ExPASy Swiss-Prot
Match: PDILT_MOUSE (Protein disulfide-isomerase-like protein of the testis OS=Mus musculus GN=Pdilt PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.725e-12
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = -1
Query:  409 MVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFR---SASGKTVPYEGDRTKEDIVDFIENN 690
            +V +  K+V + FYAPW   C+ L P+L+E+ + YQN + V+IAK D TANDI       + YP  FFR   + S + V Y+G+ T +   DF+E++
Sbjct:  397 VVLDKEKDVFVMFYAPWSEKCRVLLPLLEELGIKYQNHSTVIIAKIDITANDI--QLANPEQYP--FFRLFPTDSQEAVMYKGEHTMKGFCDFLESH 489          
The following BLAST results are available for this feature:
BLAST of CF832022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PDI1_DICDI3.218e-1340.82Protein disulfide-isomerase 1 OS=Dictyostelium dis... [more]
PDILT_RAT5.490e-1341.24Protein disulfide-isomerase-like protein of the te... [more]
PDILT_HUMAN5.490e-1342.27Protein disulfide-isomerase-like protein of the te... [more]
TMX3_XENLA2.086e-1243.37Protein disulfide-isomerase TMX3 OS=Xenopus laevis... [more]
TMX3_MOUSE2.086e-1243.90Protein disulfide-isomerase TMX3 OS=Mus musculus G... [more]
TMX3_HUMAN2.086e-1243.90Protein disulfide-isomerase TMX3 OS=Homo sapiens G... [more]
PDIA6_PONAB2.086e-1234.71Protein disulfide-isomerase A6 OS=Pongo abelii GN=... [more]
PDIA6_HUMAN2.086e-1234.71Protein disulfide-isomerase A6 OS=Homo sapiens GN=... [more]
SEP2_EMIHU2.725e-1235.00Protein disulfide-isomerase-like protein EhSep2 OS... [more]
PDILT_MOUSE2.725e-1240.21Protein disulfide-isomerase-like protein of the te... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01C24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832022 ID=CF832022; Name=CF832022; organism=Citrus sinensis; type=EST; length=837bp
CGTAATAAGCAAAATCCGAAATAATTACCCTATAAAATTAAAATTATCCA
TTACGGATTTAACACGCAGTTTGTTACTCCTAGGCCGAAAATACTAATAT
CACAACTATGCGAATACCAAAAAGTACTGCAGCTACAAATGCCTCCAATG
CCTCCCCATTTTATTCACGGGAACAGAACAGATCTGTAAAGGGAAATGGC
CTCAGAAAAAGCTATAAGGGGGGATATAGGACAAGGGGGAGGAGAACATC
AGGCATTGTTTTGTCGACACTGATAGTTTTGGTATAACATCCGCCAAACA
CGCGCCAACCGACTATGTGCACGGCTCTCTAAACATACCCATTCCTTCTT
AGAGCTCATCTTTTCCAGATTCCTCTTTTACAGTTTCCTTGGGGGCAGCT
TTGTCCCTGTTATTTTCAATGAAGTCAACAATATCTTCTTTGGTCCTATC
CCCCTCATAGGGCACTGTCTTTCCACTAGCAGATCGGAAGAACACGGTTG
GGTAACCTTGGACTTCAAAGGTGTCACCAGGAATATCATTTGCGGTTGCA
TCAAATTTTGCAATAACAACATCAGCATCATTTTGATATGAGACAGCAAC
TTCATCCAAGATTGGAGCCAACTTTTTGCAGTGTCCACACCAAGGAGCGT
AAAACTCGAGCAAAACATTTTTTCCAGAGTTGAAAACCATGTCCTGAAGG
CTGTCAGCAACAACCACTTTCACAGGCTCGTTGTTCTCTTCAGGGATAGG
CTCAAACTTTCTGAATGGGGGAACCTTGCCTTCCTTGTATTCCTTCACCC
AAGGTGCAATCTGATCGGCATTCAAGTTCGGCTTCAA
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