CF832024

Overview
NameCF832024
Unique NameCF832024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1001 contig Csv1_Contig1001:731..1578. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = -1
Query:  384 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLK 845
            LA E  +G+  ++ D V H DAIHRG  Q+IP  R  +  +   A   LLEP+  V I  P+  +G     L+ +RG +  +M++ G  +  IK+  PV E FGF+G +R AT G+      F  ++ + ++ L+P     Q+V +IR RKGLK
Sbjct:  580 LAAEKCQGVKVKLMDAVFHEDAIHRGPAQLIPAVRTGVRDAIAQANVGLLEPIQNVYISTPQDYMGDAMKELSNRRGQIL-DMEQEG-DMTTIKSKAPVSEMFGFAGAIRGATQGRCLWSIEFGGFEKVPTE-LQP-----QIVKEIRTRKGLK 725          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_HALMA (Elongation factor 2 OS=Haloarcula marismortui GN=fusA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.744e-18
Identity = 55/163 (33.74%), Postives = 89/163 (54.60%), Query Frame = -1
Query:  357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845
            LA E ++G    + D  LH DAIHRG  QVIP  R  ++ S + A  +LLEP+  V I  P   +G     +  +RG V ++M + G  L  ++   PV E  GFS  +R+AT G+A        + ++ +D L+P       +++IR+RKG+K+++ P  ++
Sbjct:  573 LASEPVQGSLIRLHDARLHEDAIHRGPAQVIPAVREAVHNSLIDASIKLLEPIQQVRIDVPNDHMGAASGEIQGRRGRV-DDMYQEG-DLMVVEGVAPVDEMIGFSSDIRSATEGRASWNTENAGFQVL-ADNLQP-----DKISEIRERKGMKQELNPAIDY 727          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_PICTO (Elongation factor 2 OS=Picrophilus torridus GN=fusA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.662e-17
Identity = 58/157 (36.94%), Postives = 84/157 (53.50%), Query Frame = -1
Query:  378 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGLKEQ 845
            LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   A   LLEP+  V I  P++ +G + + L Q+RG V E+MQ+ G  +  I A +PV    GF+  +R+AT G+         W+  ++     P      +VA IR+RKGLK +
Sbjct:  575 LANEKVYGLKVSLMDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAGRVLLEPMQKVFISVPQEIMGSVTNELQQRRG-VVEDMQQNGEEI-TIIAKVPVAGMIGFASAIRSATGGKVI-------WNSENAGYQRVPYEMQKDVVAKIRERKGLKPE 722          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_THEVO (Elongation factor 2 OS=Thermoplasma volcanium GN=fusA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.703e-17
Identity = 57/156 (36.54%), Postives = 86/156 (55.13%), Query Frame = -1
Query:  378 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 845
            LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   AK  LLEPV  V I  P++ +G   + + Q+RG V E+M + G  + ++ A +PV   FGF+  +R+AT G+     V   ++      + P  Q + +V  IR+RKGL+ +
Sbjct:  575 LANEKVFGVKARLVDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAKRILLEPVQKVFINVPQEEMGSAINEVQQRRG-VIEDMTQEGEEV-SLVARIPVSGMFGFASAIRSATGGK-----VLWSFENAGYQKVPPELQDS-VVRSIRERKGLRPE 722          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METST (Elongation factor 2 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=fusA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.316e-17
Identity = 52/154 (33.77%), Postives = 82/154 (53.25%), Query Frame = -1
Query:  387 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 845
            LA E   GI   + D  +H DA+HRG  QV+P  R+ +Y + + A+P L+EP+  V I  P+  +G     +  +RG + E  Q     +  I++ +PV E FGF+G +R+A  G    +C+   W   +S     P     ++V +IR+RKGL
Sbjct:  574 LANEKAMGIKISLMDAKIHEDAVHRGPAQVLPAIRKAVYGAIMLAQPTLMEPMQKVYISVPQDYMGAATREVQNRRGQIVEMGQE--GDMSTIESKVPVSEMFGFAGDIRSAAEG----RCI---WSTENSGFERIPRELQNKIVKEIRERKGL 718          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.838e-16
Identity = 54/153 (35.29%), Postives = 82/153 (53.59%), Query Frame = -1
Query:  387 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGL 845
            +A E   G+  ++ D  LH DAIHRG GQVIP  R  I  +   A   L EPV ++ +  P   +G + +++N +RG + +        L  IKA +PV E  GF+ TLR+ATSG+     V   ++ +  +  +      Q+V +IR+RKGL
Sbjct:  592 IAWEPCIGLIVKLTDAQLHEDAIHRGPGQVIPAVREAIKLAMKDAGLVLYEPVQVILVDVPPDYIGDVTALINSRRGAILDIQTEEDRAL--IKAKVPVREMIGFTDTLRSATSGRGVWYLVDQVYEPVPRELFD------QIVREIRQRKGL 736          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METTH (Elongation factor 2 OS=Methanobacterium thermoautotrophicum GN=fusA PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.135e-16
Identity = 46/157 (29.30%), Postives = 82/157 (52.23%), Query Frame = -1
Query:  378 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGLKEQ 845
            +A+E + G+  ++ D  +H DA+HRG  QV+P  R+ I+ + ++A+P LLEP+  V I  P+  +G     +  +RG +    Q     +  +++ +PV E FGF+G +R+AT G+         W   ++     P      +  ++R RKGL  +
Sbjct:  574 VAKEKVMGVKIKLMDAKIHEDAVHRGPAQVLPAIRKGIFGAMMSAEPVLLEPIQKVFINVPQDYMGSATREIQNRRGQIVNMTQE--GDMVTVESTVPVAEMFGFAGDIRSATEGRCL-------WSTENAGFERLPNELQHTITREVRTRKGLSPE 721          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.094e-16
Identity = 49/142 (34.51%), Postives = 76/142 (53.52%), Query Frame = -1
Query:  387 GQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQL-----VAD-----------IRKRKGL 764
            G++I + R  I+ + L   PR++  +Y  +IQ     LG +Y+V+ Q+ G +  E  + GTP + I+A++PV+E+FG S  +R  TSG A PQ VF  ++ +  DP    T   +L      AD           IR+RKGL
Sbjct:  950 GRLITSTRDAIHEAFLDWSPRIMWAIYSCDIQTSVDVLGKVYAVILQRHGKIISEEMKEGTPFFQIEAHVPVVEAFGLSEDIRKRTSGAAQPQLVFSGFECIDLDPFWVPTTEEELEELGDTADRENIARKHMNAIRRRKGL 1091          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_NATPD (Elongation factor 2 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=fusA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.094e-16
Identity = 55/157 (35.03%), Postives = 86/157 (54.78%), Query Frame = -1
Query:  375 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQM 845
            LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A+ +LLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E  GFS  +R+AT G+A        + +M +D L+P T     + +IR+RKG+K ++
Sbjct:  574 LAAEPVEGALIRLHDARLHEDAIHRGPAQVIPAVREAVHNALIDAEIKLLEPIQEVRIDVPNEHMGAASGEIQGRRGRV-DDMYQEG-DLMVVEGVAPVDEMIGFSSDIRSATEGRASWNTENAGFRVM-ADNLQPET-----IDEIRERKGMKLEL 722          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_PYRWO (Elongation factor 2 OS=Pyrococcus woesei GN=fusA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.121e-16
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = -1
Query:  387 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 845
            LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   ++Q+RG +  +M++ G  +  I A  PV E FGF+G +R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  574 LAKEPVMKVIVRLVDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGAVSREISQRRGQLI-DMRQEG-EVMTIIAEAPVAEMFGFAGAIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
The following BLAST results are available for this feature:
BLAST of CF832024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF2_META37.461e-1836.36Elongation factor 2 OS=Methanococcus aeolicus (str... [more]
EF2_HALMA9.744e-1833.74Elongation factor 2 OS=Haloarcula marismortui GN=f... [more]
EF2_PICTO1.662e-1736.94Elongation factor 2 OS=Picrophilus torridus GN=fus... [more]
EF2_THEVO3.703e-1736.54Elongation factor 2 OS=Thermoplasma volcanium GN=f... [more]
EF2_METST6.316e-1733.77Elongation factor 2 OS=Methanosphaera stadtmanae (... [more]
EF2_NANEQ1.838e-1635.29Elongation factor 2 OS=Nanoarchaeum equitans GN=fu... [more]
EF2_METTH3.135e-1629.30Elongation factor 2 OS=Methanobacterium thermoauto... [more]
RIA1_YEAST4.094e-1634.51Ribosome assembly protein 1 OS=Saccharomyces cerev... [more]
EF2_NATPD4.094e-1635.03Elongation factor 2 OS=Natronomonas pharaonis (str... [more]
EF2_PYRWO9.121e-1633.77Elongation factor 2 OS=Pyrococcus woesei GN=fusA P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01D01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832024 ID=CF832024; Name=CF832024; organism=Citrus sinensis; type=EST; length=848bp
TAATAATATATCAACCAACGTCGGCCAGAATTAGTCCTTCACATGACAGA
ACATCAAACCTTAAAAGCTGTGAATTGTAAAATTTAAAACCTAGATGACA
GAGACAGGGTTACTAAACCCAATCAACAGTAATATTACTTTACTAAACAC
AATGAGGATATTGAAAAACTTTGAAACAAAAATAAGCATCAGCAAAAAAT
ATTGCTGCGCAATCTCACCCTTGATGTCAAGATGAAATGTTTACAGCTCG
TCCTCTACTCGGATAGCGGTGTCATTTGCTCCCTCTTCCTGATATCAGCA
ACAAGCTGCGCAATCTCACCCTTGATGTCAAGACGAAATGTTTACAGCTT
GTCCTCAAACTCAGATAGTGGTGTCATTTGCTCCTTCAAGCCCTTCCTCT
TCCTGATATCAGCAACAAGCTGTGCAGCCTGTGTACCAGGCTCCAGTGGA
TCGGATGACATCATGTCCCAGTGATCAAACACACATTGTGGGAAGGCCTG
TCCTGACGTTGCAGCCCTCAAAGTGCCTGAGAATCCAAAGGACTCGATGA
CGGGAAGGTAAGCCTTGATGTTGTAAAGGGGGGTACCAGGTCTCTGCATT
TCCTCGAACACGTGACCACGTTTCTGATTGAGAACACTGTAAATACCACC
AAGGGCCTGCTCGGGAGCCTGTATTTCGACCATGTAGACAGGCTCAAGAA
GCCTGGGCTTGGCTGTGAGCTGGGAAGCATATATGACCCTCCTAGCAGTA
GGAATGACTTGACCACCACCTCTGTGAATGGCATCAGCATGAAGAACAAC
ATCACATACTTCAAAGCAGATACCTCTCATGTTCTCTTCAGCCAGCGC
back to top