CF832029

Overview
NameCF832029
Unique NameCF832029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832029_ssr112 microsatellite CF832029_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
CF832029_ssr172 microsatellite CF832029_ssr172:172..183. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6180 contig Csv1_Contig6180:17..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.188e-60
Identity = 111/184 (60.33%), Postives = 144/184 (78.26%), Query Frame = 2
Query:  197 KLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVE 742
            K+I++R ++Y KEY E ++E IRL+REAKL G FYV  E KL+F+IRI+GI+ + PK +K+LQLLRL QI NGVF+++ KAT  +L  VEPY+ +GYPNL SV++L+YKRGYGK+NKQRI L+DN+IIE+ALG++GIICMEDLIHEI TVGP FK+A+NFLWPF            R   HY+E
Sbjct:   48 KVIFSRAEKYVKEYREAEREQIRLRREAKLNGTFYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAELLRIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIHEIYTVGPAFKQASNFLWPFKLSNPSGGWGVRRKFKHYIE 231          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7_CHICK (60S ribosomal protein L7 OS=Gallus gallus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.315e-60
Identity = 112/183 (61.20%), Postives = 136/183 (74.32%), Query Frame = 2
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVE 742
            RK+IY R K Y KEY    ++ IR+ R A+  G +YV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV +LIYKRGYGK+NK+RIALTDNS+I + LG+ GIICMED+IHEI TVG +FK  NNFLWPF              H+VE
Sbjct:   45 RKIIYERAKAYHKEYRHMYRQEIRMARMARKAGNYYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVHDLIYKRGYGKINKKRIALTDNSLIRKRLGKLGIICMEDVIHEIYTVGKNFKVVNNFLWPFKLSSPRGGMKKKTIHFVE 227          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7_CAEEL (60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.504e-56
Identity = 102/179 (56.98%), Postives = 133/179 (74.30%), Query Frame = 2
Query:  206 YNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVE 742
            + R ++Y +EY   QKE +RLKREA+ KG FYV  E K+ F++RIRGIN + PK +K LQ+LRLRQI NGVF+K+NKATL +L  +EPYV +GYPN K++ +L+YKRGY K++  R+ +TDN+I+EQ+LG+  IIC+EDL HEI TVGPHFKEA NFLWPF             NH+VE
Sbjct:   47 FKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVE 225          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7_ASHGO (60S ribosomal protein L7 OS=Ashbya gossypii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.514e-56
Identity = 99/165 (60.00%), Postives = 131/165 (79.39%), Query Frame = 2
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            R  I  R   Y KEY+  ++ +I+ KREAK  G +YV  + KL+F+IRI+GIN + PK +K+LQLLRL QI +GVF+KV KAT  +L  VEPYV YGYP+  ++++L+YKRGYGK+NKQRIAL++NSI+E  LG++GII ++DLIHEI+TVGPHFK+ANNFLWPF
Sbjct:   40 RAAILERNAAYHKEYETAERAVIQAKREAKANGSYYVESQPKLVFVIRIKGINKIAPKPRKVLQLLRLNQINSGVFVKVTKATTELLRLVEPYVAYGYPSYSTIRQLVYKRGYGKINKQRIALSENSIVEANLGKYGIISVDDLIHEIITVGPHFKQANNFLWPF 204          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7C_SCHPO (60S ribosomal protein L7-C OS=Schizosaccharomyces pombe GN=rpl7c PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.623e-55
Identity = 109/193 (56.48%), Postives = 138/193 (71.50%), Query Frame = 2
Query:  110 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            LKKKK                       R+LI  R + Y  EY + ++E I L R+A+ +G +YV  E KL+F+IRIRGIN + PK +KI+QLLRL QI NGVF+K NKAT  ML  VEPYVTYG PNLK+V+EL+YKRG+GK+NKQRIAL+DN+IIE ALG++ I+ +EDLIHEI TVGP+FK+A NF+WPF
Sbjct:   21 LKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPF 213          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7_DEBHA (60S ribosomal protein L7 OS=Debaryomyces hansenii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.052e-54
Identity = 95/165 (57.58%), Postives = 133/165 (80.61%), Query Frame = 2
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            RK+I++R   Y KEY + ++ +I+ KR+AK  G +YV+ + KL+F++RI+GIN + PK +K+LQLLRL QI  GVF+++ KAT  +L   EPY+ YGYPNL +++ L+YKRG+GK+NKQRIAL+DN+IIE  LG++GI+ +EDLIHEI TVGP+FK+ANNFLWPF
Sbjct:   39 RKIIFDRAAAYQKEYTDAERAVIKAKRDAKAAGSYYVDAQPKLVFVVRIKGINKIAPKPRKVLQLLRLTQINAGVFVRLTKATSELLKLAEPYIAYGYPNLSTIRHLVYKRGHGKINKQRIALSDNAIIEANLGKYGILSIEDLIHEIYTVGPNFKQANNFLWPF 203          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7B_YEAST (60S ribosomal protein L7-B OS=Saccharomyces cerevisiae GN=RPL7B PE=1 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 5.220e-54
Identity = 92/165 (55.76%), Postives = 131/165 (79.39%), Query Frame = 2
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            R +I  R   Y KEY+  ++ +I+ KR+AK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL +I +G F+KV KATL +L  +EPYV YGYP+  ++++L+YKRG+GK+NKQR+ L+DN+IIE  LG++GI+ ++DLIHEI+TVGPHFK+ANNFLWPF
Sbjct:   41 RAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPF 205          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7A_YEAST (60S ribosomal protein L7-A OS=Saccharomyces cerevisiae GN=RPL7A PE=1 SV=3)

HSP 1 Score: 211.075 bits (536), Expect = 5.220e-54
Identity = 92/165 (55.76%), Postives = 131/165 (79.39%), Query Frame = 2
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            R +I  R   Y KEY+  ++ +I+ KR+AK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL +I +G F+KV KATL +L  +EPYV YGYP+  ++++L+YKRG+GK+NKQR+ L+DN+IIE  LG++GI+ ++DLIHEI+TVGPHFK+ANNFLWPF
Sbjct:   41 RAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPF 205          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7_DROME (60S ribosomal protein L7 OS=Drosophila melanogaster GN=RpL7 PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.163e-53
Identity = 103/177 (58.19%), Postives = 131/177 (74.01%), Query Frame = 2
Query:  212 RTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQ-HGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYV 739
            R ++Y  EY + ++  I+L+R AK +  FYV  EAKL F++RIRGIN V PK +K+LQL RLRQI NGVF+K+NKAT+NML   EPY+T+GYPNLKSV+ELIYKRG+ K N+QR+ +TDN +IE+ L Q H I C+EDL+HEI TVGP+FK A+NFLWPF             NHYV
Sbjct:   56 RAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFKYASNFLWPFKLNTPTGGWRKKANHYV 232          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7_DICDI (60S ribosomal protein L7 OS=Dictyostelium discoideum GN=rpl7 PE=1 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 1.984e-53
Identity = 98/161 (60.87%), Postives = 126/161 (78.26%), Query Frame = 2
Query:  206 YNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            + R ++Y  EY + ++E IRL R AK  G FYV P AK+ F+IRIRGIN V PK +K+L+LLRL Q+ NGVF+K+NKA++NML  VEPYV YG+PNLKS+KELIYKRG+ K++ QRI LT N ++E+ LG+ GIIC+ED+IHEI T G HFK+ NN LWPF
Sbjct:   49 FKRAEKYVSEYHKTEREAIRLNRIAKNSGTFYVPPAAKVAFVIRIRGINGVSPKPRKVLKLLRLLQLNNGVFVKLNKASINMLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEDIIHEITTCGKHFKQVNNSLWPF 209          
The following BLAST results are available for this feature:
BLAST of CF832029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7_YARLI2.188e-6060.3360S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]
RL7_CHICK8.315e-6061.2060S ribosomal protein L7 OS=Gallus gallus GN=RPL7 ... [more]
RL7_CAEEL2.504e-5656.9860S ribosomal protein L7 OS=Caenorhabditis elegans... [more]
RL7_ASHGO9.514e-5660.0060S ribosomal protein L7 OS=Ashbya gossypii GN=RPL... [more]
RL7C_SCHPO1.623e-5556.4860S ribosomal protein L7-C OS=Schizosaccharomyces ... [more]
RL7_DEBHA1.052e-5457.5860S ribosomal protein L7 OS=Debaryomyces hansenii ... [more]
RL7B_YEAST5.220e-5455.7660S ribosomal protein L7-B OS=Saccharomyces cerevi... [more]
RL7A_YEAST5.220e-5455.7660S ribosomal protein L7-A OS=Saccharomyces cerevi... [more]
RL7_DROME1.163e-5358.1960S ribosomal protein L7 OS=Drosophila melanogaste... [more]
RL7_DICDI1.984e-5360.8760S ribosomal protein L7 OS=Dictyostelium discoide... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01D03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832029 ID=CF832029; Name=CF832029; organism=Citrus sinensis; type=EST; length=742bp
CGCGAAGCCAGACCGCCTCCGTGAAGAAGATAGATCTAAAAGACCTCTAA
GAACAAATTGAACCAAAGAGATGGCTGAAGCAGCAGCTGTTGTGGTACCA
GAGTCAGTGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAA
GAAGCAGGAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGC
TCATTTACAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAA
AAAGAACTCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTA
TGTCAACCCAGAAGCTAAGCTTTTGTTCATTATCAGGATTCGCGGTATCA
ATGCTGTTGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGA
CAGATTTTTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATAT
GCTGCACAGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAGA
GTGTCAAAGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCAG
AGGATTGCTTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAGCA
TGGAATTATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTC
CTCACTTCAAGGAGGCAAACAACTTCCTATGGCCCTTCAAGCTCAAGGCA
CCATTGGGTGGCCTGAAGAAGAAGAGGAACCACTATGTTGAA
back to top