CF832029

Overview
NameCF832029
Unique NameCF832029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832029_ssr112 microsatellite CF832029_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
CF832029_ssr172 microsatellite CF832029_ssr172:172..183. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6180 contig Csv1_Contig6180:17..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7_CANGA (60S ribosomal protein L7 OS=Candida glabrata GN=RPL7 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.772e-53
Identity = 94/165 (56.97%), Postives = 128/165 (77.58%), Query Frame = 2
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            R  I  R   + KEY+  ++ +I  KREAK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL QI +G F+KV KAT  +L  +EPYV YGYP+  +V++L+YKRG+GK+NKQRIAL+DN+I+E  LG+ GI+ ++DLIHEI+TVGPHFK+ANNFLWPF
Sbjct:   41 RAAILERNAAHQKEYEAAERAVIDAKREAKASGSYYVEAQPKLVFVVRIKGINKIPPKPRKVLQLLRLTQINSGTFVKVTKATSELLKLIEPYVAYGYPSYSTVRQLVYKRGHGKINKQRIALSDNAIVEANLGKFGILSIDDLIHEIVTVGPHFKQANNFLWPF 205          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7B_SCHPO (60S ribosomal protein L7-B OS=Schizosaccharomyces pombe GN=rpl7b PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.772e-53
Identity = 100/165 (60.61%), Postives = 129/165 (78.18%), Query Frame = 2
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            R+LI  R + Y  EY   ++E I L R+A+ +G ++V  E KL+F++RIRGIN + PK +KI+QLLRL QI NG+F+K NKA   ML  VEPYVTYG PN K+V+ELIYKRG+GK+NKQRI L+DN+IIE ALG++ I+ +EDLIHEI TVGP+FK+A NFLWPF
Sbjct:   48 RELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPF 212          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.053e-50
Identity = 95/167 (56.89%), Postives = 126/167 (75.45%), Query Frame = 2
Query:  191 TRKLIYNRTKQ-YAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            TR+  + +T Q Y  EY    K L+   R+AK +GGFYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTYGYP+   +K LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +EDLIHEI TVGPHFKEAN FLW F
Sbjct:   45 TRRAQWEKTAQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAF 211          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.053e-50
Identity = 95/167 (56.89%), Postives = 126/167 (75.45%), Query Frame = 2
Query:  191 TRKLIYNRTKQ-YAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            TR+  + +T Q Y  EY    K L+   R+AK +GGFYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTYGYP+   +K LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +EDLIHEI TVGPHFKEAN FLW F
Sbjct:   45 TRRAQWEKTAQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAF 211          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7A_SCHPO (60S ribosomal protein L7-A OS=Schizosaccharomyces pombe GN=rpl7a PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.277e-48
Identity = 92/165 (55.76%), Postives = 120/165 (72.73%), Query Frame = 2
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            RK  + R + +   Y + ++E IRL R AK KG  +V  E KLLF+IRI G+  + PK +K+L+LLRL +I N VF++ NKA   ML  VEPYV YG PNL SV+ELIYKRG+GK+N QRIAL+DN++IE+ALG++ +I +ED+IHEI  VG HFKE   FLWPF
Sbjct:   47 RKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPF 211          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.595e-34
Identity = 73/158 (46.20%), Postives = 105/158 (66.46%), Query Frame = 2
Query:  212 RTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWP 685
            R + +  E+  ++ ++IR+K+  K         ++ L+FIIRI+G N + PKTK+IL  L+L+ +F GVF K   +    L +V+PYVTYGYPN KSVK+LIYK+G   +    + LTDN+IIEQALG+H I+ +EDL++EI  VG HF+E   FL P
Sbjct:   51 RPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGP 208          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7L_MOUSE (60S ribosomal protein L7-like 1 OS=Mus musculus GN=Rpl7l1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.746e-33
Identity = 69/161 (42.86%), Postives = 105/161 (65.22%), Query Frame = 2
Query:  206 YNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            + R + +  +   +Q++ +R++R         V  +  L F+IR+  I  V    K  +  L L+++F+GVF+KV   ++ ML  VEPYVT+G+PNLKSV+ELI KRG  K+N + + LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+E ++FL PF
Sbjct:   49 FRRLESFVHDSWRQQRDKVRVQRLEVKPRALEVPDKHPLAFVIRMERIEGVSLLVKSTIMKLGLKKLFSGVFVKVTPQSVRMLRTVEPYVTWGFPNLKSVRELILKRGQAKINNKTVPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKHFQEVSSFLCPF 209          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7L_PONAB (60S ribosomal protein L7-like 1 OS=Pongo abelii GN=RPL7L1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.280e-33
Identity = 71/163 (43.56%), Postives = 107/163 (65.64%), Query Frame = 2
Query:  200 LIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            L + R + +  +   ++++++RL+R         +  +  L F++RI  I+ V    ++ +  LRL++IF+GVF+KV    L ML  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+E + FL PF
Sbjct:   47 LRFKRLESFLHDSWRQKRDMVRLRRLEMKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLRPF 209          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7L_HUMAN (60S ribosomal protein L7-like 1 OS=Homo sapiens GN=RPL7L1 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.634e-33
Identity = 71/163 (43.56%), Postives = 106/163 (65.03%), Query Frame = 2
Query:  200 LIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            L + R + +  +   ++++ +RL+R         +  +  L F++RI  I+ V    ++ +  LRL++IF+GVF+KV    L ML  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+E + FL PF
Sbjct:   47 LRFKRLESFLHDSWRQKRDKVRLRRLEVKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLCPF 209          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7L_PIG (60S ribosomal protein L7-like 1 OS=Sus scrofa GN=RPL7L1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.335e-32
Identity = 69/165 (41.82%), Postives = 107/165 (64.85%), Query Frame = 2
Query:  194 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            ++L + R + +  +   + ++ +RL+R      G  V  +  L F++RI  I+ V    ++ +  LRL++IF+GVF++V   T+  L  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G +F+  + FL PF
Sbjct:   46 KELKFKRLEWFLHDSWRQLRDRVRLRRLEVKPHGLEVPDKHSLAFVVRIERISGVSSVVQRTIARLRLKKIFSGVFMQVTPQTIKTLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKIIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKNFQAISGFLRPF 210          
The following BLAST results are available for this feature:
BLAST of CF832029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7_CANGA5.772e-5356.9760S ribosomal protein L7 OS=Candida glabrata GN=RP... [more]
RL7B_SCHPO5.772e-5360.6160S ribosomal protein L7-B OS=Schizosaccharomyces ... [more]
RL72_PARTE2.053e-5056.8960S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE2.053e-5056.8960S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]
RL7A_SCHPO3.277e-4855.7660S ribosomal protein L7-A OS=Schizosaccharomyces ... [more]
RL71_ARATH4.595e-3446.2060S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]
RL7L_MOUSE1.746e-3342.8660S ribosomal protein L7-like 1 OS=Mus musculus GN... [more]
RL7L_PONAB2.280e-3343.5660S ribosomal protein L7-like 1 OS=Pongo abelii GN... [more]
RL7L_HUMAN6.634e-3343.5660S ribosomal protein L7-like 1 OS=Homo sapiens GN... [more]
RL7L_PIG7.335e-3241.8260S ribosomal protein L7-like 1 OS=Sus scrofa GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01D03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832029 ID=CF832029; Name=CF832029; organism=Citrus sinensis; type=EST; length=742bp
CGCGAAGCCAGACCGCCTCCGTGAAGAAGATAGATCTAAAAGACCTCTAA
GAACAAATTGAACCAAAGAGATGGCTGAAGCAGCAGCTGTTGTGGTACCA
GAGTCAGTGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAA
GAAGCAGGAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGC
TCATTTACAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAA
AAAGAACTCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTA
TGTCAACCCAGAAGCTAAGCTTTTGTTCATTATCAGGATTCGCGGTATCA
ATGCTGTTGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGA
CAGATTTTTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATAT
GCTGCACAGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAGA
GTGTCAAAGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCAG
AGGATTGCTTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAGCA
TGGAATTATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTC
CTCACTTCAAGGAGGCAAACAACTTCCTATGGCCCTTCAAGCTCAAGGCA
CCATTGGGTGGCCTGAAGAAGAAGAGGAACCACTATGTTGAA
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