CF832029

Overview
NameCF832029
Unique NameCF832029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832029_ssr112 microsatellite CF832029_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
CF832029_ssr172 microsatellite CF832029_ssr172:172..183. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6180 contig Csv1_Contig6180:17..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RLP7_YEAST (Ribosome biogenesis protein RLP7 OS=Saccharomyces cerevisiae GN=RLP7 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.602e-24
Identity = 62/131 (47.33%), Postives = 80/131 (61.07%), Query Frame = 2
Query:  320 LLFIIRIRGINAVDPKTK--KILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGY------GKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            LLFI+R+RG  AV+   K  KIL LLRL +   GVF+K+ K    +L  + PYV  G P+L S++ LI KRG        +     I L DN+I+E+ LG HGIIC+ED+IHEI T+G  F   N FL PF
Sbjct:  141 LLFIVRVRGPLAVNIPNKAFKILSLLRLVETNTGVFVKLTKNVYPLLKVIAPYVVIGKPSLSSIRSLIQKRGRIIYKGENEAEPHEIVLNDNNIVEEQLGDHGIICVEDIIHEIATMGESFSVCNFFLQPF 271          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RLP7_KLULA (Ribosome biogenesis protein RLP7 OS=Kluyveromyces lactis GN=RLP7 PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.139e-23
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = 2
Query:  230 KEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVD--PKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNK------QRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            ++ DEE +E   L RE  +  G     E  LLF+IR++G  AV    K  K+L LLRL ++  GVF+K+ K    +L  V PY+  G P+L S++ LI KR      +      + I L DN+I+E+ LG  G+IC+ED+IHEI T+G +F +   FL PF
Sbjct:  112 QDVDEEDEEDDGLIREKIVYDG-----EPSLLFVIRVKGPTAVKIPAKAYKVLSLLRLVELNTGVFIKLTKDVYPLLKLVSPYIVIGQPSLASIRSLIQKRSRIMWQRPEDKEPKEIILNDNNIVEEKLGDEGVICIEDIIHEISTLGENFSKCTFFLLPF 267          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RLP7_CANGA (Ribosome biogenesis protein RLP7 OS=Candida glabrata GN=RLP7 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.365e-22
Identity = 56/136 (41.18%), Postives = 88/136 (64.71%), Query Frame = 2
Query:  305 NPEAKLLFIIRIRGINA--VDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRG---YGKLNKQR---IALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            N E +LLF++R++G  A  +  K  +IL  LRL ++   VF+K+ + T ++L  + PYV  G P+LKS++ LI KR    Y + +++    I L DN+I+E+ LG  G+IC++D+IHEI T+G +F + N FL PF
Sbjct:  131 NGEEQLLFVLRVKGPVAASIPHKAYRILSTLRLEEVNTAVFIKLTETTFSLLKIIAPYVIVGKPSLKSIRSLIQKRSKIVYKREDEEEAKEIILNDNNIVEEKLGDCGVICIDDIIHEIATLGENFTKCNFFLQPF 266          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RLP7_ASHGO (Ribosome biogenesis protein RLP7 OS=Ashbya gossypii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.460e-21
Identity = 53/133 (39.85%), Postives = 79/133 (59.40%), Query Frame = 2
Query:  314 AKLLFIIRIRGINA--VDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGY------GKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            A LLF++R+RG  A  +  K  ++L LLRL ++  GVF+++      +L  V PYV  G P+L S++ L+ KR        G+     + L DN ++E+ LG  G+IC+ED+IHEI T+G  F + N FL PF
Sbjct:  110 ATLLFVVRVRGPAAAKIPRKAHRVLTLLRLAEVNTGVFVRLTAEVFPLLQVVAPYVVVGRPSLASIRALVQKRARVVHQRAGEAAPVEMVLNDNGVVEERLGDEGVICVEDIIHEIATMGEAFAKCNFFLLPF 242          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RL7_ENCCU (60S ribosomal protein L7 OS=Encephalitozoon cuniculi GN=RPL7 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.695e-20
Identity = 53/158 (33.54%), Postives = 97/158 (61.39%), Query Frame = 2
Query:  215 TKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            T++   +Y E+++E+  L++++ +K GFYV  EA+   +I IR      PK +K+L+L RL++I   V ++ NK+T  ML  ++ +V +G   ++ +++L+Y +G G+    R+ LT+  I +   G+  I C+E+L+H I      FK+ N+FL+PF
Sbjct:   48 TEKLLNKYYEQEREI--LEKKSSMKNGFYVPKEAEFFAVILIRSKCNCPPKVRKVLELFRLKRINTCVLVRNNKSTRKMLQIIKDHVAFGTIGMELLRKLVYTKGSGRNGHVRVKLTNEFIEDMFDGK--IRCIEELVHHIYNGTEMFKKVNSFLYPF 201          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RLP7_DEBHA (Ribosome biogenesis protein RLP7 OS=Debaryomyces hansenii GN=RLP7 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.874e-19
Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = 2
Query:  314 AKLLFIIRI----RGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGY-----GKLNKQRIA-LTDNSIIEQALGQH-GIICMEDLIHEILTVGPHFKEANNFLWPF 688
            AKLLFIIRI    +G+  V  K +K+L LLRL +   GVF+K+  AT+ +L  + PY+  G P+L S+++L  KR        +  + RI  L +N ++E   G   G IC+EDLIHE+ T+G HFK  +N++ PF
Sbjct:   92 AKLLFIIRIPDHTKGLK-VPSKARKVLHLLRLNRPNTGVFVKLTPATVPLLKLISPYIVAGKPSLNSIRKLFQKRACISVIDEETKEPRITKLDNNGVVEDKFGDDLGCICIEDLIHELATLGEHFKTVSNWILPF 226          
BLAST of CF832029 vs. ExPASy Swiss-Prot
Match: RLP7_PICJA (Ribosome biogenesis protein RLP7 (Fragment) OS=Pichia jadinii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17
Identity = 49/131 (37.40%), Postives = 78/131 (59.54%), Query Frame = 2
Query:  320 LLFIIRIRG-INAVDP-KTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNK------QRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPF 688
            L  I+R  G + A  P K +K+LQLLRL +I +GVF+K+ +    +L  + PY     P+L++V++L+ KR    +        +++ L DN+++E+ LG  GIIC+ED+IHE   +   FK   +FL PF
Sbjct:   32 LYLIVRTPGPVGAKIPSKVQKVLQLLRLNKINSGVFVKLTETVYPLLKLLSPYTVIXQPSLQTVRQLVQKRATVTVTHANDEEPRQVKLNDNNLVEEKLGDEGIICIEDIIHETSHLATTFKTVTHFLDPF 162          
The following BLAST results are available for this feature:
BLAST of CF832029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RLP7_YEAST9.602e-2447.33Ribosome biogenesis protein RLP7 OS=Saccharomyces ... [more]
RLP7_KLULA2.139e-2340.37Ribosome biogenesis protein RLP7 OS=Kluyveromyces ... [more]
RLP7_CANGA2.365e-2241.18Ribosome biogenesis protein RLP7 OS=Candida glabra... [more]
RLP7_ASHGO4.460e-2139.85Ribosome biogenesis protein RLP7 OS=Ashbya gossypi... [more]
RL7_ENCCU1.695e-2033.5460S ribosomal protein L7 OS=Encephalitozoon cunicu... [more]
RLP7_DEBHA1.874e-1941.91Ribosome biogenesis protein RLP7 OS=Debaryomyces h... [more]
RLP7_PICJA6.665e-1737.40Ribosome biogenesis protein RLP7 (Fragment) OS=Pic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01D03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832029 ID=CF832029; Name=CF832029; organism=Citrus sinensis; type=EST; length=742bp
CGCGAAGCCAGACCGCCTCCGTGAAGAAGATAGATCTAAAAGACCTCTAA
GAACAAATTGAACCAAAGAGATGGCTGAAGCAGCAGCTGTTGTGGTACCA
GAGTCAGTGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAA
GAAGCAGGAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGC
TCATTTACAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAA
AAAGAACTCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTA
TGTCAACCCAGAAGCTAAGCTTTTGTTCATTATCAGGATTCGCGGTATCA
ATGCTGTTGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGA
CAGATTTTTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATAT
GCTGCACAGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAGA
GTGTCAAAGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCAG
AGGATTGCTTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAGCA
TGGAATTATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTC
CTCACTTCAAGGAGGCAAACAACTTCCTATGGCCCTTCAAGCTCAAGGCA
CCATTGGGTGGCCTGAAGAAGAAGAGGAACCACTATGTTGAA
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