CF835279

Overview
NameCF835279
Unique NameCF835279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1097 contig Csv1_Contig1097:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_SALG2 (Carnitine operon protein caiE OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=caiE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 53/138 (38.41%), Postives = 78/138 (56.52%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            T + +N  +GH A+LHGC V  +A VGM + ++DG V+    +VAA S V+   +  + ++  G+PA+ LR
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_SALEP (Carnitine operon protein caiE OS=Salmonella enteritidis PT4 (strain P125109) GN=caiE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 53/138 (38.41%), Postives = 78/138 (56.52%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            T + +N  +GH A+LHGC V  +A VGM + ++DG V+    +VAA S V+   +  + ++  G+PA+ LR
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_SALDC (Carnitine operon protein caiE OS=Salmonella dublin (strain CT_02021853) GN=caiE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 53/138 (38.41%), Postives = 78/138 (56.52%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            T + +N  +GH A+LHGC V  +A VGM + ++DG V+    +VAA S V+   +  + ++  G+PA+ LR
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECO5E (Carnitine operon protein caiE OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYTDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECO57 (Carnitine operon protein caiE OS=Escherichia coli O157:H7 GN=caiE PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYTDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_SHISS (Carnitine operon protein caiE OS=Shigella sonnei (strain Ss046) GN=caiE PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_SALA4 (Carnitine operon protein caiE OS=Salmonella agona (strain SL483) GN=caiE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 52/138 (37.68%), Postives = 78/138 (56.52%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            T + +N  +GH A+LHGC V  +A VGM + ++DG ++    +VAA S V+   +  + ++  G+PA+ LR
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAMIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECOHS (Carnitine operon protein caiE OS=Escherichia coli O9:H4 (strain HS) GN=caiE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECO8A (Carnitine operon protein caiE OS=Escherichia coli O8 (strain IAI1) GN=caiE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVR 142          
BLAST of CF835279 vs. ExPASy Swiss-Prot
Match: CAIE_ECO55 (Carnitine operon protein caiE OS=Escherichia coli (strain 55989 / EAEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  263 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLR 676
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NIQD  ++H            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVR 142          
The following BLAST results are available for this feature:
BLAST of CF835279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CAIE_SALG27.865e-1938.41Carnitine operon protein caiE OS=Salmonella gallin... [more]
CAIE_SALEP7.865e-1938.41Carnitine operon protein caiE OS=Salmonella enteri... [more]
CAIE_SALDC7.865e-1938.41Carnitine operon protein caiE OS=Salmonella dublin... [more]
CAIE_ECO5E1.027e-1838.41Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO571.027e-1838.41Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_SHISS1.752e-1838.41Carnitine operon protein caiE OS=Shigella sonnei (... [more]
CAIE_SALA41.752e-1837.68Carnitine operon protein caiE OS=Salmonella agona ... [more]
CAIE_ECOHS1.752e-1838.41Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO8A1.752e-1838.41Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO551.752e-1838.41Carnitine operon protein caiE OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06P09_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835279 ID=CF835279; Name=CF835279; organism=Citrus sinensis; type=EST; length=677bp
CTCTCACACAACACACCTTCGCTCAACTTAAGAAACCCAAAACCTCACTG
AACTTGAGCTCCAAAAGTATCGACACTCAGTCACCGATCCCCAAAGCCAA
CAAGAGATGGGAACCCTAGGGCGAGCAGTTTACACCGTTGGCTTCTGGAT
TCGCGAAACCGGTCAGGCCCTTGATCGCCTCGGCTGCCGTCTCCAAGGCA
ACTACTACTTCCAAGAGCAACTGTCTAGGCATCGAACTCTCATGAACATA
TTTGATAAAGCTCCCGCAGTCGACAAGGATGCATTTGTTGCTCCAAGTGC
CTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCATCTATTTGGTATG
GATGTGTTTTGAGAGGGGATGTGAATAGCATCAGTGTTGGATCAGGAACA
AATATACAGGACAACTCCCTTGTGCATGTTGCGAAGTCTAATCTAAGTGG
GAAGGTGCTACCGACTACTATTGGGGACAATGTTACTGTAGGCCATAGTG
CTGTTTTACATGGCTGTACTGTTGAGGACGAGGCCTTTGTTGGCATGGGA
GCAACACTACTTGATGGTGTTGTTGTTGAGAGACATGGCATGGTTGCTGC
TGGATCTCTTGTGAGGCAGAATACCAGGATCCCTTCTGGAGAGGTATGGG
GAGGCAATCCAGCAAAGTTCCTGAGAA
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