CK933895

Overview
NameCK933895
Unique NameCK933895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5456 contig Csv1_Contig5456:1..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_CAEEL (60S ribosomal protein L13 OS=Caenorhabditis elegans GN=rpl-13 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.248e-45
Identity = 96/194 (49.48%), Postives = 131/194 (67.53%), Query Frame = 2
Query:   89 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP----ITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            N ++ N HF+KHW   +KTWF+QPARK RR+  RQ KA++I PRP AG LR VV     +YN K R GRGF+L+ELKAAGI +  A TIGI+VD RR N++ EGL++N  RLK YKAKL++FP++A   K GDS+ EEL  A Q++G  +P    IT ++P     +VT   +  + +  LR ERA++++ G R
Sbjct:    6 NQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPR----QVTDAERKVEIFRLLRKERADKKYRGKR 195          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_LUMRU (60S ribosomal protein L13 OS=Lumbricus rubellus GN=RPL13 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.748e-43
Identity = 92/170 (54.12%), Postives = 119/170 (70.00%), Query Frame = 2
Query:  149 FNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            FNQPARK RR+VAR+KKA+ I PRP AG LRP V  QT KYN +LR GRGF+L+ELKAAGI KK A  IGISVD RR+N+S+E LQ NVQRLK Y++KL++FP++  K   GD+  EE+  ATQ++G  +P T          +T + +  K +D+LR  RA++R  G R
Sbjct:    2 FNQPARKERRRVARRKKALAIAPRPAAGSLRPQVRCQTFKYNTRLREGRGFSLDELKAAGINKKEARAIGISVDVRRRNKSVESLQLNVQRLKEYRSKLILFPKKLSKPNKGDATEEEMKLATQLKGKLLPRTAWIKPEKARAITDEERKVKVFDRLRQARAHKRLAGKR 171          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_CANAL (60S ribosomal protein L13 OS=Candida albicans GN=RPL13 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.511e-33
Identity = 80/183 (43.72%), Postives = 110/183 (60.11%), Query Frame = 2
Query:  104 NGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITL---EKPTVDLVKVTQDMKSFKAYDKLRIERANER 643
            N HF+KHWQ  V+  F+Q  +K  R+ +R +KA KI PRP    LRPVV   T+KYN K+RAGRGFTL ELKA GI  K A TIGISVDHRR+N+S E   +NV RL+ YK+KLV+F ++ +  +       +++    V+ P     L   E P     +  +  ++ K Y  +R +RA E+
Sbjct:   11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKVRAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKKTKASEVASFEQVDVSATFPVEQPAPESGLRAVEVPEQTAYRTLRLARNEKKYKGIREKRAKEK 192          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13A_YEAST (60S ribosomal protein L13-A OS=Saccharomyces cerevisiae GN=RPL13A PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.367e-33
Identity = 84/190 (44.21%), Postives = 110/190 (57.89%), Query Frame = 2
Query:   89 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            N  I   HF+KHWQ  VK  F+Q  +K  R+ AR  +A KI PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIGI+VDHRR+NR+ E   +NVQRLK Y++K++VFPR  +       APE    A QV        + +P  D+           A+  LR+ R+ ++  G R
Sbjct:    6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGK-------APE----AEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFRGIR 183          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13B_YEAST (60S ribosomal protein L13-B OS=Saccharomyces cerevisiae GN=RPL13B PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.743e-33
Identity = 84/190 (44.21%), Postives = 110/190 (57.89%), Query Frame = 2
Query:   89 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            N  I   HF+KHWQ  VK  F+Q  +K  R+ AR  +A KI PRP    LRPVV   T+KYN K+RAGRGFTL E+KAAG+    A TIGI+VDHRR+NR+ E   +NVQRLK Y++K++VFPR  +       APE    A QV        + +P  D+           A+  LR+ R+ ++  G R
Sbjct:    6 NLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARAARAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRDGK-------APE----AEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFRGIR 183          
BLAST of CK933895 vs. ExPASy Swiss-Prot
Match: RL13_SACEX (60S ribosomal protein L13 OS=Saccharomyces exiguus GN=RPL13 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.501e-33
Identity = 82/183 (44.81%), Postives = 106/183 (57.92%), Query Frame = 2
Query:  110 HFKKHWQNYVKTWFNQPARKNRRQVARQKKAIKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 658
            HF+KHWQ  VK  FNQ  +K  R+ AR  KA KI PRP    LRPVV   T+KYN K+RAGRGFT  E+KAAG+    A TIGI+VDHRR+N++ E  + NVQRLK Y++K++VFPR  +        PE      QV        + +P V+            AY  LR+ R+ +R+ G R
Sbjct:   13 HFRKHWQERVKVHFNQAGKKASRRDARVAKAAKIAPRPL-DLLRPVVRAPTVKYNRKVRAGRGFTFGEVKAAGLTPAYARTIGIAVDHRRQNKNQEMFELNVQRLKEYQSKIIVFPRNGK-------VPE----TEQVLSTAAAFPIAQPAVETETRAVQDNGESAYRTLRMARSEKRYKGIR 183          
The following BLAST results are available for this feature:
BLAST of CK933895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CAEEL2.248e-4549.4860S ribosomal protein L13 OS=Caenorhabditis elegan... [more]
RL13_LUMRU2.748e-4354.1260S ribosomal protein L13 OS=Lumbricus rubellus GN... [more]
RL13_CANAL1.511e-3343.7260S ribosomal protein L13 OS=Candida albicans GN=R... [more]
RL13A_YEAST3.367e-3344.2160S ribosomal protein L13-A OS=Saccharomyces cerev... [more]
RL13B_YEAST5.743e-3344.2160S ribosomal protein L13-B OS=Saccharomyces cerev... [more]
RL13_SACEX7.501e-3344.8160S ribosomal protein L13 OS=Saccharomyces exiguus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004543_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933895 ID=CK933895; Name=CK933895; organism=Citrus sinensis; type=EST; length=800bp
GGGGGTTCGTTTCGGCTTTGCTGCCGTCGAGACTGAGAGAAACGGAGATA
GTCTTCTGCATTTCGCTCTGTAAACAAAAATGAAGCACAACAATGTAATT
CCAAATGGGCACTTTAAGAAGCATTGGCAGAACTATGTCAAGACTTGGTT
TAACCAACCGGCTCGCAAAAATCGACGACAAGTTGCTCGTCAAAAGAAGG
CAATTAAAATCTTCCCTCGCCCTACTGCTGGTCCTCTTCGCCCCGTCGTT
CATGGCCAGACTTTGAAATATAACATGAAATTAAGGGCTGGCAGAGGCTT
TACTCTTGAGGAACTCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCAA
CAATTGGCATTTCAGTCGATCATCGACGCAAGAACCGTTCTCTTGAGGGT
CTTCAATCTAATGTTCAGAGGCTGAAGACTTACAAGGCCAAGTTGGTTGT
TTTCCCAAGACGTGCTCGCAAGTTTAAGGCTGGTGATTCTGCTCCTGAGG
AATTGGCAACAGCAACTCAAGTACAAGGACCTTACATGCCCATTACTCTT
GAGAAGCCTACTGTCGACCTTGTTAAGGTTACTCAAGATATGAAGTCCTT
CAAGGCTTATGACAAGCTCCGGATTGAGCGTGCGAACGAGCGCCATTTTG
GTGCCAGGTTGAAGAAGGCTGCAGAGGCTGAAAAGGAAGAGAAGAAGTAA
ACAAACTTGTTTAAGCAGCACATTGAGTGTGGCACTACATTTTACATTTC
AATTTNNNATCTTTTTGTTATAGTGATTTTCATCTCTTNGCTTTAGGTTT
back to top