CK933901

Overview
NameCK933901
Unique NameCK933901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6698 contig Csv1_Contig6698:1682..2493. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUON_BEUC1 (NADH-quinone oxidoreductase subunit N OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=nuoN PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.967e-11
Identity = 29/111 (26.13%), Postives = 59/111 (53.15%), Query Frame = -2
Query:   87 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDR-------IRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGII 398
            K+ +AYSSV+H GF+++G+ +++  G++     ++++GL +   F L     +R          ++L +  GL    P + T+F++  ++   +P  SGFV + + F   I
Sbjct:  336 KRTLAYSSVAHAGFLLVGVVAMSPEGISSVFFYLLAYGLATIGAFALVALVRERDAEGNVTAEASHLAQWAGLGRRSPVVATVFALYLLSFAGIPLTSGFVGKFVAFAAAI 446          

HSP 2 Score: 30.4166 bits (67), Expect = 2.967e-11
Identity = 19/81 (23.46%), Postives = 37/81 (45.68%), Query Frame = -1
Query:  394 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYG-LIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKK 633
            K+  +PFH W PD +  A       +A    K+ A+G L+R+   + P       P+  +V  + ++     +  Q ++K+
Sbjct:  258 KVGAVPFHAWTPDVYQGAPTPITGFMAA-CTKVAAFGALLRVVYVVAPAMTWDIQPFLWVVAVLTMVVGTVLAIVQTDMKR 337          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUON_PARL1 (NADH-quinone oxidoreductase subunit N OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=nuoN PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 3.863e-11
Identity = 25/105 (23.81%), Postives = 58/105 (55.24%), Query Frame = -2
Query:   87 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFA-YLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGII 398
            K+ +AYSS+SHMGF ++G+ + T  G+ G ++ ++ + +++A +F        +  +   + ++ GL+   P +  + ++L  +   +P ++GF  +  VF   +
Sbjct:  299 KRLMAYSSISHMGFAMVGLAAGTPEGVRGVLIYLVIYVVMNAGVFCCILAMQRKEGYVENISDLAGLSRNQPMVAFMMAMLMFSLAGVPPLAGFFGKFYVFMAAV 403          

HSP 2 Score: 35.4242 bits (80), Expect = 3.863e-11
Identity = 22/81 (27.16%), Postives = 35/81 (43.21%), Query Frame = -1
Query:  394 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLI-RINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKK 633
            K+  +PFH W PD +  A        AG   K+ A  LI R+     P   S +    + +    ++  A  + GQ N+K+
Sbjct:  221 KISAVPFHMWTPDVYEGAPTPVTAFFAG-APKVAAMALILRVLFVAFPSMESEWQQIIVFIAIASMVLGAFAAIGQSNIKR 300          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUON_PELUB (NADH-quinone oxidoreductase subunit N OS=Pelagibacter ubique GN=nuoN PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 3.865e-11
Identity = 33/124 (26.61%), Postives = 70/124 (56.45%), Query Frame = -2
Query:   33 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALF-FLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLA-LPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMA 398
            K+ IAYSS+ HMG+ + G+ + ++ G+  +++ +  + +++ A F  L     +   +  +D++ GL+   P I +L  +  + SLA +P ++GF A+  +F  +I    +FL    +++ V+A
Sbjct:  290 KRLIAYSSIGHMGYALAGLSTGSNEGIQSSIVYMSIYLVMNLAFFSCLLMLKRNDAYYETIDDLSGLSKNHP-ILSLSLLAILFSLAGIPPLAGFFAKFYIFKAVIEQSMYFLAIVGLLSTVIA 412          

HSP 2 Score: 35.8094 bits (81), Expect = 3.865e-11
Identity = 23/82 (28.05%), Postives = 39/82 (47.56%), Query Frame = -1
Query:  394 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSI--FSPWFMIVGTVQIIYAASTSPGQRNLKK 633
            K+  +PFH W PD + E   +   L   I+ K+ A   + I    +P  + I  + P  + +    +I+ A  + GQ NLK+
Sbjct:  212 KISAVPFHMWAPDVY-EGSPTAVTLFFAIVPKVAAL-TVFIRFLYIPFVNMIDQWQPILIFLSIASMIFGAIAAIGQNNLKR 291          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NU4M_PARLI (NADH-ubiquinone oxidoreductase chain 4 OS=Paracentrotus lividus GN=ND4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = -2
Query:    3 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIGMILTPIYS 398
            K  IAYSSV HM  +   I S T+ G NGA++ +I++GL+S+ LF LA T Y+R     L    GL   +P     + ++S A+L LP     + E+++   +I +   +L P      ++ +  I   IYS
Sbjct:  287 KALIAYSSVGHMSIVAAAIFSSTNWGTNGALILMIAYGLVSSDLFSLANTVYERSGTRTLAITRGLKTILPLSTLWWLVMSAANLGLPPSPNLIGEILILSSLI-AWSIWLFP------IIGLATIFGAIYS 411          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUON_MYCTU (NADH-quinone oxidoreductase subunit N OS=Mycobacterium tuberculosis GN=nuoN PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 4.999e-11
Identity = 29/105 (27.62%), Postives = 51/105 (48.57%), Query Frame = -2
Query:   99 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAG-----TSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVF 398
            K+ +AYSSV+H+GFI+ G+ +    GL+  +  ++++   +   F + G             A L    GL    P +  + S+  +A   +P  SGFV++  VF
Sbjct:  342 KRMLAYSSVAHVGFILTGVIADNPAGLSATLFYLVAYSFSTMGAFAIVGLVRGADGSAGSEDADLSHWAGLGQRSPIVGVMLSMFLLAFAGIPLTSGFVSKFAVF 446          

HSP 2 Score: 38.1206 bits (87), Expect = 4.999e-11
Identity = 22/81 (27.16%), Postives = 39/81 (48.15%), Query Frame = -1
Query:  394 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYG-LIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKK 633
            K+  +PFH+W+PD +  A       +A    K+ A+G L+R+    LP  H  + P    +  + +     T+  Q N+K+
Sbjct:  264 KVGAVPFHSWIPDVYQGAPTPITGFMAA-ATKVAAFGALLRVVYVALPPLHDQWRPVLWAIAILTMTVGTVTAVNQTNVKR 343          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUON_MYCBO (NADH-quinone oxidoreductase subunit N OS=Mycobacterium bovis GN=nuoN PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 4.999e-11
Identity = 29/105 (27.62%), Postives = 51/105 (48.57%), Query Frame = -2
Query:   99 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAG-----TSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVF 398
            K+ +AYSSV+H+GFI+ G+ +    GL+  +  ++++   +   F + G             A L    GL    P +  + S+  +A   +P  SGFV++  VF
Sbjct:  342 KRMLAYSSVAHVGFILTGVIADNPAGLSATLFYLVAYSFSTMGAFAIVGLVRGADGSAGSEDADLSHWAGLGQRSPIVGVMLSMFLLAFAGIPLTSGFVSKFAVF 446          

HSP 2 Score: 38.1206 bits (87), Expect = 4.999e-11
Identity = 22/81 (27.16%), Postives = 39/81 (48.15%), Query Frame = -1
Query:  394 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYG-LIRINMGLLPHAHSIFSPWFMIVGTVQIIYAASTSPGQRNLKK 633
            K+  +PFH+W+PD +  A       +A    K+ A+G L+R+    LP  H  + P    +  + +     T+  Q N+K+
Sbjct:  264 KVGAVPFHSWIPDVYQGAPTPITGFMAA-ATKVAAFGALLRVVYVALPPLHDQWRPVLWAIAILTMTVGTVTAVNQTNVKR 343          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUON1_HYDS0 (NADH-quinone oxidoreductase subunit N 1 OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=nuoN1 PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 8.439e-11
Identity = 30/125 (24.00%), Postives = 60/125 (48.00%), Query Frame = -2
Query:   27 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFLAGTSYDRIRF-AYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITSQKFFLMPKIVITFVMAIG 398
            K+ +AYSS++H G+I+  + S +  GL  A+  +  + ++    F +         +   L E+GGL      +   F++   A L +P   GFV + +VF G+     ++L   +++   ++ G
Sbjct:  304 KRLLAYSSIAHSGYILSVLSSNSSMGLKAAIYFVFVYSIMGLGAFLVLSVLEQSDEWNNQLSEIGGLYRNTGFLSISFAVFIFALLGIPPTIGFVGKALVFLGLAIKNIYWLGFVLILATAISTG 428          

HSP 2 Score: 34.6538 bits (78), Expect = 8.439e-11
Identity = 22/85 (25.88%), Postives = 42/85 (49.41%), Query Frame = -1
Query:  394 VKLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHS-IFSPWFM---IVGTVQIIYAASTSPGQRNLKK 636
            +K+ IIPFH WLPD    A+ +    + G +   G        + L+P+ +  ++S W +   I+  + +I   + +  Q +LK+
Sbjct:  225 IKIGIIPFHFWLPD----AYTAAPTPITGFMASAGKLAFFIPLLRLVPYVNQYLYSSWMISVSILAAITMIVGNALALVQSDLKR 305          
BLAST of CK933901 vs. ExPASy Swiss-Prot
Match: NUON_ACIF2 (NADH-quinone oxidoreductase subunit N OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=nuoN PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 8.446e-11
Identity = 36/112 (32.14%), Postives = 58/112 (51.79%), Query Frame = -2
Query:   81 KKRIAYSSVSHMGFIILGIGSITDTGLNGAVLQIISHGLISAALFFL------AGTSYDRIRFAYLDEMGGLAIPIPKIFTLFSILSMASLALPGMSGFVAELIVFFGIITS 398
            K+ +AYS++ H+GF++LGI + T+ GL  A    + + L+S A F +      AG   +RI     D+  GLA   P    L  I+  +   +P   GF A+L VF  ++ +
Sbjct:  297 KRMLAYSTIGHVGFMLLGIVAGTEAGLASAFFYTVVYTLMSLAGFGMILLVSRAGFEAERI-----DDFKGLAQRKPWYAFLMMIVMFSMAGVPPTVGFYAKLAVFQAVVAA 403          

HSP 2 Score: 32.7278 bits (73), Expect = 8.446e-11
Identity = 25/83 (30.12%), Postives = 40/83 (48.19%), Query Frame = -1
Query:  394 KLPIIPFHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMGLLPHAHSIFSPW---FMIVGTVQIIYAASTSPGQRNLKK 633
            KL   PFH WLPD +  A       LA    K+GA+ LI I + L+   + +   W   F+ +  V ++     +  Q+N+K+
Sbjct:  219 KLGAAPFHMWLPDVYQGAPTVVTAFLAS-APKIGAFALI-IRL-LVDGGYGMQESWQQIFVALTVVSLVVGNVIAIAQQNIKR 298          
The following BLAST results are available for this feature:
BLAST of CK933901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
NUON_BEUC12.967e-1126.13NADH-quinone oxidoreductase subunit N OS=Beutenber... [more]
NUON_PARL13.863e-1123.81NADH-quinone oxidoreductase subunit N OS=Parvibacu... [more]
NUON_PELUB3.865e-1126.61NADH-quinone oxidoreductase subunit N OS=Pelagibac... [more]
NU4M_PARLI4.856e-1133.33NADH-ubiquinone oxidoreductase chain 4 OS=Paracent... [more]
NUON_MYCTU4.999e-1127.62NADH-quinone oxidoreductase subunit N OS=Mycobacte... [more]
NUON_MYCBO4.999e-1127.62NADH-quinone oxidoreductase subunit N OS=Mycobacte... [more]
NUON1_HYDS08.439e-1124.00NADH-quinone oxidoreductase subunit N 1 OS=Hydroge... [more]
NUON_ACIF28.446e-1132.14NADH-quinone oxidoreductase subunit N OS=Acidithio... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933901 ID=CK933901; Name=CK933901; organism=Citrus sinensis; type=EST; length=813bp
GGGGAATAAATAGGAGTTAATATCATTCCAATTGCCATTACAAAAGTGAT
TACTATTTTTGGCATTAAAAAAAATTTTTGGCTGGTAATTATTCCAAAAA
ATACTATCAATTCTGCAACAAAACCACTCATGCCGGGTAATGCAAGGGAG
GCCATCGATAAGATACTGAATAGCGTGAAGATCTTTGGAATTGGTATAGC
TAGTCCGCCCATTTCGTCTAGATAAGCAAAACGTATTCTATCATAACTCG
TTCCTGCCAAGAAAAAAAGTGCAGCACTAATCAACCCATGAGAAATTATT
TGTAAAACGGCTCCATTGAGACCTGTATCGGTTATCGAGCCTATTCCTAG
AATTATGAAACCCATATGAGATACAGAGGAATAGGCTATTCTTTTTTTTT
AAATTCCGTTGGCCGGGAGATGTTGAAGCTGCATAAATTATTTGCACGGT
ACCTACTATCATGAACCAGGGGGAAAATATAGAATGAGCGTGCGGTAATA
GTCCCATATTGATTCGAATCAACCCATATGCTCCCATTTTTAATAAGATT
CCGGCTAGAAGCATACAAGTACTGTAATGTGCCTCTCCGTGGGTGTCTGG
TAACCACGTATGAAAGGGTATAATTGGCAATTTGACAGCAAAAGCAATAA
AAAATCCAATATAGAATATTATTTCCAGTGCCACAGGATACGACCGATTA
ACTAATGTTTCCAAATTTAATGTTGGTTCATTGGAACCATATAAACCGAT
ACCCAAAACTCCTATTAAAAGAAAAACGGAGCCTCCTGCCGTGTACAAAA
TAAATTTTGTGGC
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