CK933903

Overview
NameCK933903
Unique NameCK933903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933903_ssr242 microsatellite CK933903_ssr242:242..253. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1886 contig Csv1_Contig1886:3..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHB14_BOVIN (17-beta-hydroxysteroid dehydrogenase 14 OS=Bos taurus GN=HSD17B14 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.916e-29
Identity = 80/254 (31.50%), Postives = 141/254 (55.51%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLG----GMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            R  GKV ++TGG RGIG    R F + GA+V+I D  +  G +V +++           ++ CDVT+E+D+   V+  + ++G+LD + NNAG      P   +   A+ F ++L +NL+G +  TK A   ++ + RG++I+ +S+ G IG +    Y ++K  +  + K  A++  ++G+RVNC+SP  + TPL ++      D       G  +   G + +P ++A AA++L S+ + C +G  L+V GG
Sbjct:    6 RYAGKVVIVTGGGRGIGAGIVRAFVESGAQVVICDKDEARGRAVERELPGTV-------FLLCDVTREEDVRTLVSETIRRFGRLDCIVNNAGY--HPPPQWPEETSAQGFRQLLELNLLGTYTLTKLALPHLRKS-RGNVINISSLVGAIGQSQAVPYVATKGAVTAMTKALALDESQYGVRVNCISPGNIWTPLWEELAASTPDPTATIREGTLAQPLGRMGQPAEVAAAAVFLASEATFC-TGTELLVTGG 248          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHB14_HUMAN (17-beta-hydroxysteroid dehydrogenase 14 OS=Homo sapiens GN=HSD17B14 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.502e-29
Identity = 80/254 (31.50%), Postives = 140/254 (55.12%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLG----GMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            R  GKV ++TGG RGIG    R F   GA+V+I D  +  G ++ +++           ++ CDVT+E D++  V+  + ++G+LD + NNAG      P   +   A+ F ++L +NL+G +  TK A   ++ + +G++I+ +S+ G IG A    Y ++K  +  + K  A++   +G+RVNC+SP  + TPL ++   L  D       GM +   G + +P ++  AA++L S+ + C +G  L+V GG
Sbjct:    6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAV-------FILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAG--HHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRATIREGMLAQPLGRMGQPAEVGAAAVFLASEANFC-TGIELLVTGG 248          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: Y019_THEMA (Uncharacterized oxidoreductase TM_0019 OS=Thermotoga maritima GN=TM_0019 PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.268e-29
Identity = 87/257 (33.85%), Postives = 136/257 (52.92%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLG---ESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTP--LAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDE-SKCVSGHNLVVDGGFAI 847
            L+GKVA++TGG +GIG   A+LF+++G KV+IA+I ++ G   E + ++            +V  DV  E  ++N V   V  YG +D++ NNA  +  VK +I +    E+ER++ +NL G ++ +++ A  M   G G II+ AS         T  Y++SK GL+ L  + AV L R+ IRV  +SP  + T     K   K  D        +  G V  P DIA   ++L  DE +  ++G N +VDGG  +
Sbjct:    2 LEGKVAVVTGGGQGIGAAIAQLFAENGMKVVIAEIDEEAGVEREEMLRE------RGLDVTFVKTDVADENSVKNMVRKTVEIYGGVDVLVNNAAVMS-VK-SIFERPLEEWERVIRVNLTGPYICSRYCAEEMIKRGGGVIINIASTRAFQSEPDTEPYSASKGGLVALTHSLAVSLSRYHIRVVSISPGWIETSEWKKKSLRKKPDLRPIDHEQHPAGRVGNPLDIAHLCVFLADDEKAGFITGTNFIVDGGMTV 250          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.622e-28
Identity = 89/255 (34.90%), Postives = 136/255 (53.33%), Query Frame = 2
Query:   98 QGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLA---DDGLGGMYSNLKGAVL-EPEDIAEAALYLGSDESKCVSGHNLVVDGGFAIV 850
            QGKV LITG   GIG+  A +F++ GAKV I DI ++ G+   + I           ++  DV K  D E  V   V  +G+LDI+ NNAG V     NI +  + +F++ +++N+ G FL +K+A   MK  G G I++ +S  G+IG      Y+ SK  LLGL ++ AV+   +GIRVN V P    +      +K +   ++ L  M S +    L + E+IA A L+   DE+  ++G  + +DGG   V
Sbjct:    4 QGKVVLITGAGSGIGKKAAVMFAERGAKVAINDISEEKGKETVELIKSMGGEAA---FIFGDVAK--DAEQIVKKTVETFGRLDILVNNAGIVPY--GNIEETSEEDFDKTMAVNVKGPFLLSKYAVEQMKKQGGGVIVNVSSEAGLIGIPRRCVYSVSKAALLGLTRSLAVDYVDYGIRVNAVCPGTTQSEGLMARVKASPNPEELLKKMTSRIPMKRLGKEEEIAFAILFAACDEAGFMTGSIINIDGGSTAV 251          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: BAIA1_EUBSP (Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (strain VPI 12708) GN=baiA1 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 2.118e-28
Identity = 87/251 (34.66%), Postives = 133/251 (52.99%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAG-TVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDF-LKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGF 841
            +Q K+ +ITGG RGIG   A+LF ++GAKV I     +  ++    +           +   D+T    +  AV T   +YG+LD+M NNAG T++ V   + + D   F+ I+ IN+ G F G   A + MK A +G II+TASV GI G  +   Y +SK G++GL      E+ R  IRV  V+P VV T + K    ++ +D L  +       +L+PE+IA   L+L SD +  ++   + VDG +
Sbjct:    4 VQDKITIITGGTRGIGFAAAKLFIENGAKVSIFGETQEEVDTALAQLKELYPEEEVLGFAP-DLTSRDAVMAAVGTVAQKYGRLDVMINNAGITMNSVFSRVSEED---FKNIMDINVNGVFNGAWSAYQCMKDAKQGVIINTASVTGIYGSLSGIGYPTSKAGVIGLTHGLGREIIRKNIRVVGVAPGVVDTDMTKGLPPEILEDYLKTLPMK---RMLKPEEIANVYLFLASDLASGITATTISVDGAY 247          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHG_BACSU (Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gdh PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.766e-28
Identity = 86/251 (34.26%), Postives = 136/251 (54.18%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAAR-VMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNL--KGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            L+GKV  ITG A G+G+  A  F K  AKV+I    +    +  K+             V  DVTKE+D++N V TA+ ++G LDIM NNAG  + V  +  +    ++++++  NL GAFLG++ A +  ++   +G++I+ +SV  +I       YA+SK G+  + +  A+E    GIRVN + P  ++TP+  +  K AD        ++   G + EPE+IA  A +L S E+  V+G  L  DGG
Sbjct:    5 LKGKVVAITGAASGLGKAMAIRFGKEQAKVVINYYSNKQDPNEVKE--EVIKAGGEAVVVQGDVTKEEDVKNIVQTAIKEFGTLDIMINNAGLENPVPSH--EMPLKDWDKVIGTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEVIPWPLFVHYAASKGGIKLMTETLALEYAPKGIRVNNIGPGAINTPINAE--KFADPKQKADVESMIPMGYIGEPEEIAAVAAWLASKEASYVTGITLFADGG 249          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: FABG_CHLTR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia trachomatis GN=fabG PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 3.613e-28
Identity = 81/251 (32.27%), Postives = 131/251 (52.19%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFL-KLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFA 844
            L  K A++TGG+RGIG   A+LF++ GA V I  I  + G++  + +            V  DV+K   +   V   + +Y  +D++ NNAG   +    ++   + E+  +++ NL   +       R M  A  G+II+ +S+ G+ G      YA++K G++G  K  + E+G   IRVNC++P  + T + K     L ++ L G+     G V  PE+IA+AAL+L SD S  ++G  L VDGG A
Sbjct:    5 LVNKTAIVTGGSRGIGFSIAKLFAEQGANVQIWGINGEAGQAAAQTLSEQTGRQVSFALV--DVSKNDMVSAQVQNFLAEYNTIDVIVNNAGITRDAL--LMRMSEEEWSSVINTNLGSIYNVCSAVIRPMIKARSGAIINISSIVGLRGSPGQTNYAAAKAGIIGFSKALSKEVGSKNIRVNCIAPGFIDTDMTKSLNDNLKNEWLKGV---PLGRVGMPEEIAKAALFLASDGSSYITGQVLSVDGGMA 248          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: UCPA_SALTY (Oxidoreductase ucpA OS=Salmonella typhimurium GN=ucpA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.049e-28
Identity = 85/256 (33.20%), Postives = 135/256 (52.73%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCG-IIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLAD-DGLGGMYSNLKGAV-----LEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            +L GK ALITG ++GIGE  AR+F++HGA +++ DI D++ E +  ++            V  DV     ++ AV  A    G++DI+ NNAG       N LD  + + +  + IN+ G +  TK     M     G I+  +SV G ++      AYA SK  ++GL K+ AVE  + GIRVN + P  V TP+A+   + ++ D    + + +  A+      +P ++ E A +L SDES  ++G   V+DGG
Sbjct:    3 KLTGKTALITGASQGIGEGIARVFARHGANLILLDISDEI-EKLADELGGRGHRCTA---VKADVRDFASVQAAVARAKETEGRIDILVNNAGVCR--LGNFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPDDPESVLTEMAKAIPLRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: UCPA_SALTI (Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.049e-28
Identity = 85/256 (33.20%), Postives = 135/256 (52.73%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCG-IIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLAD-DGLGGMYSNLKGAV-----LEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            +L GK ALITG ++GIGE  AR+F++HGA +++ DI D++ E +  ++            V  DV     ++ AV  A    G++DI+ NNAG       N LD  + + +  + IN+ G +  TK     M     G I+  +SV G ++      AYA SK  ++GL K+ AVE  + GIRVN + P  V TP+A+   + ++ D    + + +  A+      +P ++ E A +L SDES  ++G   V+DGG
Sbjct:    3 KLTGKTALITGASQGIGEGIARVFARHGANLILLDISDEI-EKLADELGGRGHRCTA---VKADVRDFASVQAAVARAKETEGRIDILVNNAGVCR--LGNFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPDDPESVLTEMAKAIPLRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: Y4MP_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4mP OS=Rhizobium sp. (strain NGR234) GN=NGR_a02430 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.059e-27
Identity = 90/260 (34.62%), Postives = 136/260 (52.31%), Query Frame = 2
Query:   95 LQGKVALITGGA--RGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVC-----GIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFL--KLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFAI 847
            L+GK A+I+G A  RGIG  TA LF+ HGA+V I DI  D  ++   D+            + CDV       +A +  ++ +G  +I+ NNAG    VK   LD   A+++RI+++N+ G    ++     M+  G GSI   +SV      GI GG     Y+++K G+LGL K  A E G   IRVNCV+P ++ T +  D L  ++  D + G+  +  G   +  D+A   L+L SD S  V+G  + V+GG  I
Sbjct:    3 LKGKTAVISGAASKRGIGRATAELFASHGARVAILDINADEAKAAAGDLPPVEHGAHIG--LRCDVADRASCTSASDEVLSAFGVANILINNAGITQPVKT--LDISDADWQRIVAVNMTGVLNLSQVFIPNMRQNGGGSIACMSSVSAQRGGGIFGGPH---YSAAKAGVLGLAKAMAREFGPDSIRVNCVTPGLIQTDITGDKLSAEMRADIVKGIPLSRLG---DARDVANIYLFLASDLSAYVTGAVIDVNGGMLI 252          
The following BLAST results are available for this feature:
BLAST of CK933903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
DHB14_BOVIN1.916e-2931.5017-beta-hydroxysteroid dehydrogenase 14 OS=Bos tau... [more]
DHB14_HUMAN2.502e-2931.5017-beta-hydroxysteroid dehydrogenase 14 OS=Homo sa... [more]
Y019_THEMA3.268e-2933.85Uncharacterized oxidoreductase TM_0019 OS=Thermoto... [more]
Y325_THEMA1.622e-2834.90Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]
BAIA1_EUBSP2.118e-2834.66Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (... [more]
DHG_BACSU2.766e-2834.26Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gd... [more]
FABG_CHLTR3.613e-2832.273-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
UCPA_SALTY8.049e-2833.20Oxidoreductase ucpA OS=Salmonella typhimurium GN=u... [more]
UCPA_SALTI8.049e-2833.20Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE... [more]
Y4MP_RHISN3.059e-2734.62Uncharacterized short-chain type dehydrogenase/red... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933903 ID=CK933903; Name=CK933903; organism=Citrus sinensis; type=EST; length=854bp
GGGGCAAGACACCATAACTTACCTTCATATTTTGGTTGCTGTGCGTGCTA
TAAGAATGGGCAGTGCTTCAGTTGTCTCAGCTGCAGCAAGAAGGCTACAA
GGCAAAGTGGCACTTATCACAGGAGGAGCAAGAGGCATTGGGGAATGCAC
TGCAAGGCTCTTCTCAAAACATGGAGCTAAAGTACTCATTGCAGATATTA
AAGATGACTTGGGCGAATCTGTATGCAAAGACATAGGCTCTTCATCATCA
TCAGCCAGCGGCTGCTCCTATGTCCATTGTGATGTAACCAAAGAGAAAGA
TATCGAAAACGCCGTTAACACGGCAGTCACTCAGTACGGAAAGCTAGACA
TTATGTTCAATAACGCCGGCACTGTGGATGAAGTCAAACCTAACATACTC
GATAACGATCAGGCTGAATTTGAGCGCATACTTTCCATTAACCTCGTTGG
CGCATTTTTGGGGACGAAACATGCTGCTAGGGTGATGAAACCCGCCGGAC
GAGGCAGCATAATTTCAACTGCGAGCGTTTGCGGAATCATTGGTGGCGCT
GCAACACATGCATACGCTAGTTCAAAGCATGGCCTTTTGGGGCTGATGAA
GAATACTGCTGTGGAGCTTGGACGATTTGGCATTAGGGTCAATTGTGTGT
CACCTTATGTGGTCTCAACTCCATTAGCTAAGGATTTTCTCAAGCTTGCT
GATGATGGTTTGGGCGGCATGTATTCAAATCTTAAGGGGGCTGTTCTTGA
GCCTGAGGATATAGCTGAAGCTGCTCTTTATTTGGGGAGTGATGAGTCTA
AGTGTGTGAGTGGGCATAATTTGGTCGTAGATGGAGGATTTGCTATTGTC
AATG
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