CK933903

Overview
NameCK933903
Unique NameCK933903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933903_ssr242 microsatellite CK933903_ssr242:242..253. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1886 contig Csv1_Contig1886:3..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: YGCW_ECOLI (Uncharacterized oxidoreductase ygcW OS=Escherichia coli (strain K12) GN=ygcW PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.768e-26
Identity = 78/254 (30.71%), Postives = 134/254 (52.76%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPL---AKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFAI 847
            L+GK A++TGG  G+G+  A   +K GA + I     D GE+  K++           ++   +T E   +  +     ++G +DI+ NNAG     K  +LD  +A+++ ++ +NL  AF  +  AA++M P   G II+  S+   +GG  + AY+++KH L G  K    ELG++ I+VN ++P   +T +    +   +     L  + +N  G   + +D+  AA++L S  S  V+GH LVVDGG+ +
Sbjct:   16 LKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGET--KEMIEKQGVEVD--FMQVGITAEGAPQKIIAACCERFGTVDILVNNAGICKLNK--VLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWG---DTQDLMGAAVFLASPASNYVNGHLLVVDGGYLV 260          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: YKVO_BACSU (Uncharacterized oxidoreductase ykvO OS=Bacillus subtilis GN=ykvO PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.192e-25
Identity = 87/258 (33.72%), Postives = 126/258 (48.84%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLK-----GAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFAIV 850
            + +GK+AL+TGG  GIG  TA+ F   GA V I   + +  +     I            V  D++K +D++   +    + GKLDI+F NAG  + +    +  +Q +  R   IN+ G     + A  +  P   GSII T S  G IG  A   Y +SK  L  L++N  ++L    IRVN VSP  + TP    + +L  D L  +  N +     G V  PE++A A  +L SDES  ++G  L VDGG A V
Sbjct:    3 KFEGKIALVTGGTSGIGLATAQKFVNEGAYVYITGRRQNELDKAVNQIGKNVTG------VQGDISKLEDLDKLYDIIKQEKGKLDILFANAGIGNFLPLGEITEEQVD--RTFDINVKGTIFTVQKALSLF-PDKVGSIIVTGSTAGSIGNPAFSVYGASKAALRALVRNWILDLKGTEIRVNVVSPGGILTPA---YDELFGDALEEVLENSRNTVPAGKVGTPEEVANAVSFLASDESSYLTGVELFVDGGLAQV 248          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: BDH2_BOVIN (3-hydroxybutyrate dehydrogenase type 2 OS=Bos taurus GN=BDH2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.192e-25
Identity = 81/260 (31.15%), Postives = 133/260 (51.15%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVH---CDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATH-AYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLK----GAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFAI 847
            RL GKV ++T  A+GIG   A  F+K GAKV+  DI D   + + K              +H    DVTK+K I+   N       +LD++FN AG V      ILD ++ +++  +++N+   +L  K     M     G+II+ +SV   I G      Y+++K  ++GL K+ A +  + GIR NCV P  V TP  ++ ++   +    +   LK    G     E++A   +YL SDES  ++G+ +++DGG+++
Sbjct:    3 RLDGKVIVLTAAAQGIGRAAALAFAKEGAKVIATDINDSKLQELDK-----------YPGIHTRVLDVTKKKQIDQFAN----DIERLDVLFNVAGFVHH--GTILDCEETDWDFSMNLNVRSMYLMIKAFLPKMMAQKSGNIINMSSVASSIKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARPNPEEALSDFLKRQKTGRFATAEEVALLCVYLASDESAYITGNPVIIDGGWSL 245          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: FABG5_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 5, chloroplastic (Fragment) OS=Brassica napus GN=bkr1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.863e-25
Identity = 78/255 (30.59%), Postives = 131/255 (51.37%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDL-GESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLK-GAVLEPEDIAEAALYLG-SDESKCVSGHNLVVDGGFAI 847
            +++  V ++TG +RGIG+  A    K G KVL+   +     E V K I               DV+KE D+++ + TAV ++G +D++ NNAG   +    ++   +++++ ++ +NL G FL T+ A ++M    +G II+ ASV G+IG      YA++K G++G  K  A E     I VN V P  +++ +     KL +D    +   +  G   +PE +A    +L  S  S  ++GH   + GGFAI
Sbjct:   71 KVESPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKEAEEVSKQIEEYGGEAITFGG---DVSKEADVDSMMKTAVDKWGTIDVVVNNAGITRDTL--LIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMT---AKLGEDMEKKILGTIPLGRYGQPEYVAGLVEFLALSPASSYITGHTFSIHGGFAI 317          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: BUTA_STAES (Acetoin(diacetyl) reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=butA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.863e-25
Identity = 81/256 (31.64%), Postives = 128/256 (50.00%), Query Frame = 2
Query:  104 KVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAA-RVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTP----LAKDFLKLAD-----DGLGGMYSNLK-GAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            K A+ITG A G+G+  A   +  G  +++ DI + L     K+                DV+K+K+ E  V  AVT++G+LD+M NNAG VD V P IL+  + E  ++ +IN+ G   G + AA + +K   +G II+  S+ G         Y+++KH +    +  A EL   GI VN   P V  T     + ++ +KL D     D      S +K G   EP D+A    +L S++S  ++G +++ DGG
Sbjct:    3 KTAIITGAAGGLGKGIAERLANDGFNIVLQDINEALLLETEKEFKEKGYQAVAYK---SDVSKKKEQEELVQFAVTEFGQLDVMVNNAG-VDAVTP-ILEIGEEELSKLFNINVFGTLFGIQAAANQFIKQKSKGKIINACSIAGHESYEVLGTYSATKHSVRSFTQTAAKELADKGITVNAYCPGVAKTEMWDRIDEEMVKLDDSLEIGDAFEAFSSEIKLGRYQEPSDVANLVSFLASNDSDYITGQSILTDGG 253          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: BUTA_STAEQ (Acetoin(diacetyl) reductase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=butA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.863e-25
Identity = 81/256 (31.64%), Postives = 128/256 (50.00%), Query Frame = 2
Query:  104 KVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAA-RVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTP----LAKDFLKLAD-----DGLGGMYSNLK-GAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            K A+ITG A G+G+  A   +  G  +++ DI + L     K+                DV+K+K+ E  V  AVT++G+LD+M NNAG VD V P IL+  + E  ++ +IN+ G   G + AA + +K   +G II+  S+ G         Y+++KH +    +  A EL   GI VN   P V  T     + ++ +KL D     D      S +K G   EP D+A    +L S++S  ++G +++ DGG
Sbjct:    3 KTAIITGSAGGLGKGIAERLANDGFNIVLQDINEALLLETEKEFKEKGYQAVAFK---SDVSKKKEQEELVQFAVTEFGQLDVMVNNAG-VDAVTP-ILEIGEEELSKLFNINVFGTLFGIQAAANQFIKQKSKGKIINACSIAGHESYEVLGTYSATKHSVRSFTQTAAKELADKGITVNAYCPGVAKTEMWDRIDEEMVKLDDSLEIGDAFEAFSSEIKLGRYQEPSDVANLVSFLASNDSDYITGQSILTDGG 253          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: UCPA_ECOLI (Oxidoreductase ucpA OS=Escherichia coli (strain K12) GN=ucpA PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 4.883e-25
Identity = 80/256 (31.25%), Postives = 131/256 (51.17%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCG-IIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLAD-DGLGGMYSNLKGAV-----LEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            +L GK ALITG  +GIGE  AR F++HGA +++ DI  ++ E +  ++            V  DV     +  A+  A  + G++DI+ NNAG         + +D  +F   + IN+ G +  TK     M     G I+  +SV G ++      AYA +K  ++GL K+ AVE  + GIRVN + P  V TP+A+   + ++ +    + + +  A+      +P ++ E A +L SDES  ++G   V+DGG
Sbjct:    3 KLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEI-EKLADELCGRGHRCTA---VVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDDDRDFH--IDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPMRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: UCPA_ECO57 (Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN=ucpA PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.883e-25
Identity = 80/256 (31.25%), Postives = 131/256 (51.17%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCG-IIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLAD-DGLGGMYSNLKGAV-----LEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            +L GK ALITG  +GIGE  AR F++HGA +++ DI  ++ E +  ++            V  DV     +  A+  A  + G++DI+ NNAG         + +D  +F   + IN+ G +  TK     M     G I+  +SV G ++      AYA +K  ++GL K+ AVE  + GIRVN + P  V TP+A+   + ++ +    + + +  A+      +P ++ E A +L SDES  ++G   V+DGG
Sbjct:    3 KLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEI-EKLADELCGRGHRCTA---VVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDDDRDFH--IDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPLRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HDHA_ECOLI (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli (strain K12) GN=hdhA PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.377e-25
Identity = 80/249 (32.13%), Postives = 124/249 (49.80%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            RL GK A+ITG   GIG+  A  F+  GA V+++DI  D    V  +I              CD+T E+++    + A+++ GK+DI+ NNAG      P   D   A+F R   +N+   F  ++  A  M+  G G I++  S+          +YASSK     L++N A +LG   IRVN ++P  + T   K  +    +     ++ ++  + +P+DIA AAL+L S  +  VSG  L V GG
Sbjct:    8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFAC---RCDITSEQELSALADFAISKLGKVDILVNNAGGGG---PKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIR-RLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HDHA_ECO57 (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli O157:H7 GN=hdhA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.377e-25
Identity = 80/249 (32.13%), Postives = 124/249 (49.80%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            RL GK A+ITG   GIG+  A  F+  GA V+++DI  D    V  +I              CD+T E+++    + A+++ GK+DI+ NNAG      P   D   A+F R   +N+   F  ++  A  M+  G G I++  S+          +YASSK     L++N A +LG   IRVN ++P  + T   K  +    +     ++ ++  + +P+DIA AAL+L S  +  VSG  L V GG
Sbjct:    8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFAC---RCDITSEQELSALADFAISKLGKVDILVNNAGGGG---PKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIR-RLGQPQDIANAALFLCSPAASWVSGQILTVSGG 249          
The following BLAST results are available for this feature:
BLAST of CK933903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
YGCW_ECOLI5.768e-2630.71Uncharacterized oxidoreductase ygcW OS=Escherichia... [more]
YKVO_BACSU2.192e-2533.72Uncharacterized oxidoreductase ykvO OS=Bacillus su... [more]
BDH2_BOVIN2.192e-2531.153-hydroxybutyrate dehydrogenase type 2 OS=Bos taur... [more]
FABG5_BRANA2.863e-2530.593-oxoacyl-[acyl-carrier-protein] reductase 5, chlo... [more]
BUTA_STAES2.863e-2531.64Acetoin(diacetyl) reductase OS=Staphylococcus epid... [more]
BUTA_STAEQ2.863e-2531.64Acetoin(diacetyl) reductase OS=Staphylococcus epid... [more]
UCPA_ECOLI4.883e-2531.25Oxidoreductase ucpA OS=Escherichia coli (strain K1... [more]
UCPA_ECO574.883e-2531.25Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN... [more]
HDHA_ECOLI6.377e-2532.137-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
HDHA_ECO576.377e-2532.137-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933903 ID=CK933903; Name=CK933903; organism=Citrus sinensis; type=EST; length=854bp
GGGGCAAGACACCATAACTTACCTTCATATTTTGGTTGCTGTGCGTGCTA
TAAGAATGGGCAGTGCTTCAGTTGTCTCAGCTGCAGCAAGAAGGCTACAA
GGCAAAGTGGCACTTATCACAGGAGGAGCAAGAGGCATTGGGGAATGCAC
TGCAAGGCTCTTCTCAAAACATGGAGCTAAAGTACTCATTGCAGATATTA
AAGATGACTTGGGCGAATCTGTATGCAAAGACATAGGCTCTTCATCATCA
TCAGCCAGCGGCTGCTCCTATGTCCATTGTGATGTAACCAAAGAGAAAGA
TATCGAAAACGCCGTTAACACGGCAGTCACTCAGTACGGAAAGCTAGACA
TTATGTTCAATAACGCCGGCACTGTGGATGAAGTCAAACCTAACATACTC
GATAACGATCAGGCTGAATTTGAGCGCATACTTTCCATTAACCTCGTTGG
CGCATTTTTGGGGACGAAACATGCTGCTAGGGTGATGAAACCCGCCGGAC
GAGGCAGCATAATTTCAACTGCGAGCGTTTGCGGAATCATTGGTGGCGCT
GCAACACATGCATACGCTAGTTCAAAGCATGGCCTTTTGGGGCTGATGAA
GAATACTGCTGTGGAGCTTGGACGATTTGGCATTAGGGTCAATTGTGTGT
CACCTTATGTGGTCTCAACTCCATTAGCTAAGGATTTTCTCAAGCTTGCT
GATGATGGTTTGGGCGGCATGTATTCAAATCTTAAGGGGGCTGTTCTTGA
GCCTGAGGATATAGCTGAAGCTGCTCTTTATTTGGGGAGTGATGAGTCTA
AGTGTGTGAGTGGGCATAATTTGGTCGTAGATGGAGGATTTGCTATTGTC
AATG
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