CK933903

Overview
NameCK933903
Unique NameCK933903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK933903_ssr242 microsatellite CK933903_ssr242:242..253. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1886 contig Csv1_Contig1886:3..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: FABG_RICBR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia bellii (strain RML369-C) GN=fabG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.051e-24
Identity = 78/253 (30.83%), Postives = 126/253 (49.80%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNL-KGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFAIV 850
            L G+ ALITG + GIG   AR   K G+ V+I+   ++  +++  D+              C++T  ++  N V     Q  KLDI+  NAG   +     + N+  +F++++ INL   F+  + A + M     G II+  S+ G+ G      Y +SK GL+G+ K+ A E+   GI VN V+P  + + +     KL D+    +   + KG    PEDIA A  +L S +S  ++G  L V+GG  +V
Sbjct:    4 LSGQTALITGASGGIGGAIARQLHKLGSHVIISGSNEEKLKALGNDLKDNYTIKV------CNLTNTEECSNLV----AQIEKLDILVCNAGITKDTLAIRMKNE--DFDQVIDINLKANFILNREAIKKMMTNRYGRIINITSIVGVSGNPGQANYCASKAGLIGMTKSLAYEVATRGITVNAVAPGFIKSDMTD---KLNDEQKEAITRKIPKGTYGMPEDIANAVAFLASKQSSYITGQTLHVNGGMLMV 241          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: HCDR_XANP2 (2-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecD PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 9.209e-24
Identity = 71/253 (28.06%), Postives = 122/253 (48.22%), Query Frame = 2
Query:  104 KVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAK---DFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFAIV 850
            +VA++TG + G G   A  F   G +V   D+  +  E   +              V  DV  E D+  A+   + Q+G +D++ NNAG     +  +L     E F++++++N+ G FLG +     M   G G I++ ASV  ++      AY +SK  +L L K+ AV+    GIR N V P ++ TP+ +   D  +L D  L  +     G   +   +A+A ++L  +++  V+G  LV+DG +  +
Sbjct:    3 RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETART--HWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAAQ---VADAVMFLAGEDATYVNGAALVMDGAYTAI 250          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: PGDH_RAT (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Rattus norvegicus GN=Hpgd PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.203e-23
Identity = 75/247 (30.36%), Postives = 122/247 (49.39%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLV----GAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAV--ELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGA------VLEPEDIAEAALYLGSDES 799
            + GKVAL+TG A+GIG+        HGAKV + D   + G   CK             ++ CDV  +K + +     V  +G+LDI+ NNAG           N++  +E+ L INLV    G +LG  + ++     G G II+ +S+ G++  A    Y +SKHG++G  ++ A+   L + G+R+N + P  V TP+ +   K  + G    Y++   A      +L+P  IA   + L  D++
Sbjct:    3 VNGKVALVTGAAQGIGKAFTEALLLHGAKVALVDWNLETGVK-CKAALDEQFEPQKTLFIQCDVADQKQLRDTFRKVVDHFGRLDILVNNAGV----------NNEKNWEQTLQINLVSVISGTYLGLDYMSKQNGGEG-GIIINISSIAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVKTPILESIEKEENMGQYIEYTDQIKAMMKFYGILDPSAIANGLINLIEDDA 237          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHG2_BACSU (Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=ycdF PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.203e-23
Identity = 76/252 (30.16%), Postives = 130/252 (51.59%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAA-RVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFAI 847
            L GK A++TG ++GIG+  A  F K    V++    D  G     +I            V  DV+KE+ I+  ++TA+  +G LD+M NN+G  + V+    +    +++R++ +N+ G FLG K A   +MK   +G++++ +SV   I       Y++SK G+  + +  A+     GIRVN ++P  ++T    D  K  +     +      A  +PE++A AA +L S+E+  V+G  L VDGG  +
Sbjct:    5 LTGKTAIVTGSSKGIGKAIAERFGKEKMNVVVNYHSDPSGADETLEIIKQNGGKAVS--VEADVSKEEGIQALLDTALEHFGTLDVMVNNSG-FNGVEAMPHEMSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQIPRPVNVQYSTSKGGIKMMTETLALNYADKGIRVNAIAPGTIATESNVD-TKKEESRQKQLKKIPMKAFGKPEEVAAAAAWLVSEEASYVTGATLFVDGGMTL 252          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: FABG_RICCN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia conorii GN=fabG PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.969e-23
Identity = 77/254 (30.31%), Postives = 129/254 (50.79%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAG-TVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLK-GAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFAIV 850
            L GK +LITG + GIG   ARL  K G+ V+I+   ++  +S+ K +              C++  +++  N ++ A     KLDI+  NAG T D +   + D D   F++++ INL   F+  + A + M     G II+ +S+ GI G      Y +SK GL+G+ K+ + E+   GI VN V+P  + + +     KL +     +   +  G    PED+A A  +L SD++  ++G  + V+GG  +V
Sbjct:    4 LTGKTSLITGASGGIGGAIARLLHKLGSHVIISGSNEEKLQSLGKVVKDNYTIEV------CNLADKEECRNLISKA----SKLDILVCNAGITSDTLAIRMKDED---FDKVIDINLKANFILNREAIKKMIQNRYGRIINISSIVGISGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNTVAPGFIKSDMTD---KLNEKQREAIVQKIPLGTYGMPEDVAHAVAFLASDQASYITGQTIHVNGGMLMV 241          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: 3BHD_COMTE (3-beta-hydroxysteroid dehydrogenase OS=Comamonas testosteroni PE=1 SV=5)

HSP 1 Score: 108.227 bits (269), Expect = 5.969e-23
Identity = 82/253 (32.41%), Postives = 122/253 (48.22%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAE-FERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGR--FGIRVNCVSPYVVSTPLAKDFLKLA---DDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVD 832
            RLQGKVAL+TGGA G+G    +L    GAKV  +DI +  G+ +  ++           +V  DV+ E D    +     + G L+++ NNAG    + P  ++  + E F R+L IN    F+G +     MK  G GSII+ ASV   +       Y++SK  +  L +  A+   +  + IRVN + P  + TP+ +  L      +  L     N  G    PE IA+  L+L SDES  +SG  L  D
Sbjct:    4 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL------GERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGI---LLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLFLASDESSVMSGSELHAD 246          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHMA_FLAS1 (N-acylmannosamine 1-dehydrogenase OS=Flavobacterium sp. (strain 141-8) PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 7.796e-23
Identity = 78/260 (30.00%), Postives = 122/260 (46.92%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGS------IISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSP---YVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGFA 844
            RL GK A++TG A GIG  T   + + GA V+  D+   L  +  ++             + CD+     I+ A+  AV + G LDI+    G +     N LD   A+++R + +N+ G FL  +  AR M  AG G       II+  SV   +      AY ++K G+  L +  AV+L R GI VN ++P    V          +LA+  L  +     G    PE++A AA++L  D S  ++G  + +DGG +
Sbjct:   12 RLAGKAAIVTGAAGGIGRATVEAYLREGASVVAMDLAPRLAATRYEE--------PGAIPIACDLADRAAIDAAMADAVARLGGLDILV-AGGALKGGTGNFLDLSDADWDRYVDVNMTGTFLTCRAGARAMVAAGAGKDGRSARIITIGSVNSFMAEPEAAAYVAAKGGVAMLTRAMAVDLARHGILVNMIAPGPVDVTGNNTGYSEPRLAEQVLDEVALGRPGL---PEEVATAAVFLAEDGSSFITGSTITIDGGLS 259          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: BDHA_RALEH (D-beta-hydroxybutyrate dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hbdH1 PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.796e-23
Identity = 77/259 (29.73%), Postives = 122/259 (47.10%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAARVMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLK----------GAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGGF 841
            L GK AL+TG   GIG   A+  +  GA +++    D       K             Y   D++K  +IE+ +  A + +G  DI+ NNAG +  V   I D     ++ I++INL  AF  T+ A   MK    G II+ AS  G++  A   AY ++KHG++G  K TA+E  + G+  N + P  V TPL +  ++      G      K          G  + P+++   A++L S+ ++ V G    +DGG+
Sbjct:    2 LNGKTALVTGSTSGIGLGIAKALAAQGANIIVNGFGD---ADAAKAEIAQAGQGIRVGYHGADMSKAAEIEDMMRYAQSDFGGADILVNNAG-IQHVAA-IEDFPPERWDAIIAINLTSAFHTTRLALPGMKQKDWGRIINVASTHGLVASAQKSAYVAAKHGIVGFTKVTALETAQTGVTANAICPGWVLTPLVQKQVEARAQKEGIPVEQAKRELVLEKQPSGQFVTPDELGALAVFLSSEAARQVRGAIWNMDGGW 255          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: DHB8_RAT (Estradiol 17-beta-dehydrogenase 8 OS=Rattus norvegicus GN=Hsd17b8 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.018e-22
Identity = 75/256 (29.30%), Postives = 127/256 (49.61%), Query Frame = 2
Query:   92 RLQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQ-----YGKLDIMFNNAG-TVDEVKPNILDNDQAEFERILSINLVGAFLGTKHAAR-VMKPAGRGSIISTASVCGIIGGAATHAYASSKHGLLGLMKNTAVELGRFGIRVNCVSPYVVSTPLAKDFLKLADDGLGGMYSNLKGAVLEPEDIAEAALYLGSDESKCVSGHNLVVDGG 838
            RL+  +AL+TG   GIG   +   +  GA V   D+     +   + +             H     +     A    + Q     +    ++ + AG T DE    +L   + +++R++++NL G FL T+ AA+ ++   GRGSII+ +S+ G +G      YASSK G++GL +  A ELGR GIR N V P  ++TP+ +   +   D +  M     G + +PED+A+   +L S++S  ++G ++ V GG
Sbjct:    6 RLRSALALVTGAGSGIGRAISVRLAAEGAAVAACDLDGAAAQDTVRLLGNPGSEDREPRGKHAAFQADVSEGPAAKRLLEQVQACFFRPPSVVVSCAGITRDEF---LLHMSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIVGKVGNIGQTNYASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKMPEKVKDKVTAMIP--LGHMGDPEDVADVVAFLASEDSGYITGASVEVSGG 256          
BLAST of CK933903 vs. ExPASy Swiss-Prot
Match: PGDH_BOVIN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bos taurus GN=HPGD PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.330e-22
Identity = 76/248 (30.65%), Postives = 122/248 (49.19%), Query Frame = 2
Query:   95 LQGKVALITGGARGIGECTARLFSKHGAKVLIADIKDDLGESVCKDIXXXXXXXXXXXYVHCDVTKEKDIENAVNTAVTQYGKLDIMFNNAGTVDEVKPNILDNDQAEFERILSINLV----GAFLGTKHAARVMKPAGRGSI-ISTASVCGIIGGAATHAYASSKHGLLGLMKNTAV--ELGRFGIRVNCVSPYVVSTPLAKDFLKLADDG-----LGGMYSNLK-GAVLEPEDIAEAALYLGSDES 799
            + GKVAL+TG A+GIG   A      GAKV + D   + G   CK             ++ CDV  ++ + +     V  +GKLDI+ NNAG           N++  +E+ L INLV    G +LG  + ++  +  G G I I+ +S+ G++  A    Y +SKHG++G  ++ A+   L   G+R+N + P  V TP+ K   K  + G     +G +   +K   +L+P  IA   + L  D++
Sbjct:    3 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVK-CKAALDEQFEPQKTLFIQCDVADQEQLRDTFRKVVDHFGKLDILVNNAGV----------NNEKNWEKTLQINLVSVISGTYLGLDYMSK--QNGGEGGININMSSLAGLMPVAQQPVYCASKHGIVGFTRSAAMAANLMNSGVRLNAICPGFVDTPILKSIEKEENMGKYIEYMGPIKDMMKYYGILDPSMIANGLITLIEDDA 237          
The following BLAST results are available for this feature:
BLAST of CK933903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
FABG_RICBR7.051e-2430.833-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
HCDR_XANP29.209e-2428.062-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobac... [more]
PGDH_RAT1.203e-2330.3615-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ra... [more]
DHG2_BACSU1.203e-2330.16Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=... [more]
FABG_RICCN5.969e-2330.313-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
3BHD_COMTE5.969e-2332.413-beta-hydroxysteroid dehydrogenase OS=Comamonas t... [more]
DHMA_FLAS17.796e-2330.00N-acylmannosamine 1-dehydrogenase OS=Flavobacteriu... [more]
BDHA_RALEH7.796e-2329.73D-beta-hydroxybutyrate dehydrogenase OS=Ralstonia ... [more]
DHB8_RAT1.018e-2229.30Estradiol 17-beta-dehydrogenase 8 OS=Rattus norveg... [more]
PGDH_BOVIN1.330e-2230.6515-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004543_H07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK933903 ID=CK933903; Name=CK933903; organism=Citrus sinensis; type=EST; length=854bp
GGGGCAAGACACCATAACTTACCTTCATATTTTGGTTGCTGTGCGTGCTA
TAAGAATGGGCAGTGCTTCAGTTGTCTCAGCTGCAGCAAGAAGGCTACAA
GGCAAAGTGGCACTTATCACAGGAGGAGCAAGAGGCATTGGGGAATGCAC
TGCAAGGCTCTTCTCAAAACATGGAGCTAAAGTACTCATTGCAGATATTA
AAGATGACTTGGGCGAATCTGTATGCAAAGACATAGGCTCTTCATCATCA
TCAGCCAGCGGCTGCTCCTATGTCCATTGTGATGTAACCAAAGAGAAAGA
TATCGAAAACGCCGTTAACACGGCAGTCACTCAGTACGGAAAGCTAGACA
TTATGTTCAATAACGCCGGCACTGTGGATGAAGTCAAACCTAACATACTC
GATAACGATCAGGCTGAATTTGAGCGCATACTTTCCATTAACCTCGTTGG
CGCATTTTTGGGGACGAAACATGCTGCTAGGGTGATGAAACCCGCCGGAC
GAGGCAGCATAATTTCAACTGCGAGCGTTTGCGGAATCATTGGTGGCGCT
GCAACACATGCATACGCTAGTTCAAAGCATGGCCTTTTGGGGCTGATGAA
GAATACTGCTGTGGAGCTTGGACGATTTGGCATTAGGGTCAATTGTGTGT
CACCTTATGTGGTCTCAACTCCATTAGCTAAGGATTTTCTCAAGCTTGCT
GATGATGGTTTGGGCGGCATGTATTCAAATCTTAAGGGGGCTGTTCTTGA
GCCTGAGGATATAGCTGAAGCTGCTCTTTATTTGGGGAGTGATGAGTCTA
AGTGTGTGAGTGGGCATAATTTGGTCGTAGATGGAGGATTTGCTATTGTC
AATG
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