CK933906 | Citrus Genome Database

Overview


Name	CK933906
Unique Name	CK933906
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	847

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4378	contig	Csv1_Contig4378:26..872.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB1_CHICK (High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.438e-13
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 1

Query:  220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447
            DPN PKRP S FF+F  EFR + K  +P   S+  V K  GE W ++S+ +K PY  KA K K +YEKD+ DY  +
Sbjct:   88 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSK 162

[Close]

BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB1_RAT (High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1

Query:  220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165

[Close]

BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB1_PAPAN (High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1

Query:  220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165

[Close]

BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB1_MOUSE (High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1

Query:  220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165

[Close]

BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB1_MACFA (High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1

Query:  220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165

[Close]

BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB1_HUMAN (High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1

Query:  220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165

[Close]

BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB1_HORSE (High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1

Query:  220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165

[Close]

BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB1_CRIGR (High mobility group protein B1 (Fragment) OS=Cricetulus griseus GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1

Query:  220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   56 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 130

[Close]

BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB1_CANFA (High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1

Query:  220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165

[Close]

BLAST of CK933906 vs. ExPASy Swiss-Prot
Match: HMGB1_CALMO (High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1

Query:  220 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKDYNRR 447
            DPN PKRP SAFF+F  E+R + K +HP   S+  V K  GE W + +  DK PY  KA K K +YEKD+  Y  +
Sbjct:   91 DPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165

The following BLAST results are available for this feature:

BLAST of CK933906 vs. ExPASy Swiss-Prot

BLAST of CK933906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39


Match Name	E-value	Identity	Description
HMGB1_CHICK	9.438e-13	47.37	High mobility group protein B1 OS=Gallus gallus GN...	[more]
HMGB1_RAT	2.103e-12	47.37	High mobility group protein B1 OS=Rattus norvegicu...	[more]
HMGB1_PAPAN	2.103e-12	47.37	High mobility group protein B1 OS=Papio anubis GN=...	[more]
HMGB1_MOUSE	2.103e-12	47.37	High mobility group protein B1 OS=Mus musculus GN=...	[more]
HMGB1_MACFA	2.103e-12	47.37	High mobility group protein B1 OS=Macaca fascicula...	[more]
HMGB1_HUMAN	2.103e-12	47.37	High mobility group protein B1 OS=Homo sapiens GN=...	[more]
HMGB1_HORSE	2.103e-12	47.37	High mobility group protein B1 OS=Equus caballus G...	[more]
HMGB1_CRIGR	2.103e-12	47.37	High mobility group protein B1 (Fragment) OS=Crice...	[more]
HMGB1_CANFA	2.103e-12	47.37	High mobility group protein B1 OS=Canis familiaris...	[more]
HMGB1_CALMO	2.103e-12	47.37	High mobility group protein B1 OS=Callicebus moloc...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004543_G03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIF_G03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK933906 ID=CK933906; Name=CK933906; organism=Citrus sinensis; type=EST; length=847bp
GGGGACACAAACAACGCATCCGCTATTCACATCTGCGTCTCTCTCTTTTT
CTCTTTCCTCTTTTTCTCTCATTTGAAGCCCTAACCCTAGCTCTATCTTT
CTTCAGAAACAGGATTTGAAATGAAAGGAGGTAAATCAAAGTCAGACACC
AGAAACGCCAAGCTCTCTGTGAACAAGAAGCCTGCCAAAGCTGGACGAAA
ATCGGGAAAGGCAGCTAAGGACCCGAACAAGCCAAAGAGGCCAGCCAGCG
CCTTCTTTGTTTTCATGGAAGAATTCCGTGAACAATACAAGAAGGATCAT
CCTAAGAACAAATCAGTTGCTGCTGTTGGTAAAGCTGGTGGTGAGAAATG
GAAGTCAATGTCTGAAGCTGATAAAGCACCGTATGTTGCTAAGGCAGAGA
AGCGCAAGGTTGAGTATGAGAAGGATATGAAAGACTACAATAGGAGACAG
GCGGAGGGAACTAAGCCGGAGGAAGAAGAGGAGTCTGAGAAGTCTATGTC
AGAGGTGAATGATGAGGATGATGATGAAGAAGGCAGTGGCGAGGAGGATG
ATGATGAATAGAAGTTGAAGGAAGAAATTAGCATAGTCATGTTAGGCTGT
GACAATGTTTCAAACAACATATGTTAATGCTTTGTGCTTCCATGTTAATT
TTTTTGGATGCTTTCATCATCTTCATCATCATGTAAGAGAATCATGTTGC
TTCTCCCTCGACATTTTCTTATGCCTGCCTTTCAAAGAATTAATAGCTGT
AGGTGGGAGATTCACTGCTCTATATGTACTGTGTTCTAAAGCTTAATGAT
TTAGCTAAGGCGTTCCATCGTTTGTAAAAAAAAAAAAAAAAAAAAAA